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EF hand calcium-binding protein family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827993, updated on 18-Sep-2024

Summary

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Official Full Name
EF hand calcium-binding protein family
Primary source
TAIR:AT4G03290
Locus tag
AT4G03290
See related
Araport:AT4G03290
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F4C21.22; F4C21_22
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Genomic context

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Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (1442546..1443638)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene photosynthetic electron transfer C Neighboring gene tRNA-Thr Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A genome-wide functional characterization of Arabidopsis regulatory calcium sensors in pollen tubes. Zhou L, et al. J Integr Plant Biol, 2009 Aug. PMID 19686372
  2. Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Bae MS, et al. Plant J, 2003 Dec. PMID 14617066
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_116567.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
EF hand calcium-binding protein family
NP_192238.1
  • EF hand calcium-binding protein family; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT1G05990.1); Has 24510 Blast hits to 17278 proteins in 1569 species: Archae - 2; Bacteria - 188; Metazoa - 10458; Fungi - 4683; Plants - 5334; Viruses - 0; Other Eukaryotes - 3845 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    1442546..1443638
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116567.4 → NP_192238.1  EF hand calcium-binding protein family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192238.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZR02
    UniProtKB/TrEMBL
    A0A178V173, A0A5S9XQA9, E0Y423
    Conserved Domains (1) summary
    PTZ00184
    Location:5 → 144
    PTZ00184; calmodulin; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZR02.1

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