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Protein with RNI-like/FBD-like domain [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828021, updated on 18-Sep-2024

Summary

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Official Full Name
Protein with RNI-like/FBD-like domain
Primary source
TAIR:AT4G03220
Locus tag
AT4G03220
See related
Araport:AT4G03220
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F4C21.15; F4C21_15
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (1417472..1419148)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Coproporphyrinogen III oxidase Neighboring gene xyloglucan endotransglucosylase/hydrolase 9 Neighboring gene G-type lectin S-receptor-like Serine/Threonine-kinase Neighboring gene frataxin-like protein Neighboring gene Homeodomain-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Protein with RNI-like/FBD-like domain
NP_192231.1
  • Protein with RNI-like/FBD-like domains; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G59210.4); Has 1478 Blast hits to 1464 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1476; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    1417472..1419148
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116560.1 → NP_192231.1  Protein with RNI-like/FBD-like domain [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192231.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZR09
    UniProtKB/TrEMBL
    A0A5S9XRA7
    Conserved Domains (3) summary
    smart00579
    Location:425 → 498
    FBD; domain in FBox and BRCT domain containing plant proteins
    sd00032
    Location:178 → 205
    LRR_2; leucine-rich repeat [structural motif]
    pfam00646
    Location:24 → 64
    F-box; F-box domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZR09.1

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