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TIP1;3 tonoplast intrinsic protein 1;3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828051, updated on 18-Sep-2024

Summary

Official Symbol
TIP1;3
Official Full Name
tonoplast intrinsic protein 1;3
Primary source
TAIR:AT4G01470
Locus tag
AT4G01470
See related
Araport:AT4G01470
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATTIP1.3; F11O4.1; F11O4_1; GAMMA-TIP3; tonoplast intrinsic protein 1;3
Summary
Encodes AtTIP1;3, functions as water and urea channels in pollen.
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Genomic context

See TIP1;3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (624786..625885, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene pyrophosphorylase 5 Neighboring gene ncRNA

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_116377.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables urea transmembrane transporter activity IDA
Inferred from Direct Assay
more info
PubMed 
enables water channel activity IDA
Inferred from Direct Assay
more info
PubMed 
enables water channel activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within urea transport IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within water transport IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
tonoplast intrinsic protein 1;3
NP_192056.1
  • tonoplast intrinsic protein 1;3 (TIP1;3); FUNCTIONS IN: water channel activity, urea transmembrane transporter activity; INVOLVED IN: transport, urea transport, water transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: gamma tonoplast intrinsic protein (TAIR:AT2G36830.1); Has 10761 Blast hits to 10728 proteins in 2135 species: Archae - 83; Bacteria - 5069; Metazoa - 1488; Fungi - 435; Plants - 2488; Viruses - 0; Other Eukaryotes - 1198 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    624786..625885 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116377.2NP_192056.1  tonoplast intrinsic protein 1;3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192056.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0MF47, O82598, Q1PEC5
    UniProtKB/TrEMBL
    A0A178UYQ7, A0A654FKX8
    Conserved Domains (1) summary
    PLN00027
    Location:1252
    PLN00027; aquaporin TIP; Provisional