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LOC8280742 protein disulfide isomerase-like 5-4 [ Ricinus communis (castor bean) ]

Gene ID: 8280742, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8280742
Gene description
protein disulfide isomerase-like 5-4
Locus tag
RCOM_0185010
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8280742 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 9 NC_063264.1 (8474550..8483052)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994404.1 (493405..501885, complement)

Chromosome 9 - NC_063264.1Genomic Context describing neighboring genes Neighboring gene vascular-related unknown protein 1 Neighboring gene electron transfer flavoprotein subunit alpha, mitochondrial Neighboring gene early nodulin-like protein 1 Neighboring gene rab GTPase-activating protein 22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein disulfide isomerase-like 5-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063264.1 Reference ASM1957865v1

    Range
    8474550..8483052
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002522818.4 → XP_002522864.1  protein disulfide isomerase-like 5-4

    See identical proteins and their annotated locations for XP_002522864.1

    UniProtKB/TrEMBL
    B9SA45
    Conserved Domains (3) summary
    cd02961
    Location:144 → 258
    PDI_a_family; Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI ...
    pfam07970
    Location:288 → 459
    COPIIcoated_ERV; Endoplasmic reticulum vesicle transporter
    pfam13850
    Location:7 → 98
    ERGIC_N; Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Nucleotide Protein
Heading Accession and Version

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