U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

GH9B13 glycosyl hydrolase 9B13 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828080, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
GH9B13
Official Full Name
glycosyl hydrolase 9B13
Primary source
TAIR:AT4G02290
Locus tag
AT4G02290
See related
Araport:AT4G02290
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtGH9B13; glycosyl hydrolase 9B13; T2H3.5; T2H3_5
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See GH9B13 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Sequence:
Chromosome: 4; NC_003075.7 (1002338..1005305, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene root hair specific 13 Neighboring gene sucrose synthase 3 Neighboring gene ncRNA Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

NM_001340370.1
NM_116462.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cellulase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
glycosyl hydrolase 9B13
NP_192138.1
  • glycosyl hydrolase 9B13 (GH9B13); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: cellulase 2 (TAIR:AT1G02800.1); Has 1736 Blast hits to 1717 proteins in 249 species: Archae - 2; Bacteria - 566; Metazoa - 187; Fungi - 17; Plants - 926; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    1002338..1005305 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116462.4 → NP_192138.1  glycosyl hydrolase 9B13 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192138.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O81416
    UniProtKB/TrEMBL
    A0A5S9XP54, A0A654FL72
    Conserved Domains (1) summary
    PLN02266
    Location:12 → 516
    PLN02266; endoglucanase

  2. NM_001340370.1 → NP_001328883.1  glycosyl hydrolase 9B13 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UVL7, A0A1P8B606
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O81416.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.