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RHS13 root hair specific 13 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828083, updated on 18-Sep-2024

Summary

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Official Symbol
RHS13
Official Full Name
root hair specific 13
Primary source
TAIR:AT4G02270
Locus tag
AT4G02270
See related
Araport:AT4G02270
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
root hair specific 13; T2H3.4; T2H3_4
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Genomic context

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See RHS13 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_003075.7 (992111..993039, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene RELA/SPOT homolog 1 Neighboring gene sucrose synthase 3 Neighboring gene glycosyl hydrolase 9B13

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A cell-wall protein SRPP provides physiological integrity to the Arabidopsis seed. Uno H, et al. J Plant Res, 2019 Jan. PMID 30673938
  2. Enhancement of cell wall protein SRPP expression during emergent root hair development in Arabidopsis. Uno H, et al. Plant Signal Behav, 2017 Oct 3. PMID 28837399, Free PMC Article
  3. SRPP, a Cell Wall Protein is Involved in Development and Protection of Seeds and Root Hairs in Arabidopsis thaliana. Tanaka N, et al. Plant Cell Physiol, 2017 Apr 1. PMID 28138059
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. These results indicate that SRPP is essential for the production of normal viable seeds in siliques under stress conditions.
    Title: A cell-wall protein SRPP provides physiological integrity to the Arabidopsis seed.
  2. SRPP contributes to the construction of robust cell walls, whereby it plays a key role in the development of root hairs and seeds. [SRPP]
    Title: SRPP, a Cell Wall Protein is Involved in Development and Protection of Seeds and Root Hairs in Arabidopsis thaliana.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_116460.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in cellular response to phosphate starvation IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in cellular response to phosphate starvation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in heat acclimation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within plant-type cell wall biogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to ethylene IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to low humidity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in root hair cell development IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in root hair cell development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in seed development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in unidimensional cell growth IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
root hair specific 13
NP_192136.1
  • root hair specific 13 (RHS13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root hair, root; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT2G47540.1); Has 108 Blast hits to 108 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    992111..993039 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116460.4 → NP_192136.1  root hair specific 13 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192136.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O81417
    UniProtKB/TrEMBL
    A0A178UY93, A0A654FL81
    Conserved Domains (1) summary
    pfam01190
    Location:42 → 129
    Pollen_Ole_e_I; Pollen proteins Ole e I like
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O81417.1

Gene LinkOut

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