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PME38 pectin methylesterase 38 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828218, updated on 18-Sep-2024

Summary

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Official Symbol
PME38
Official Full Name
pectin methylesterase 38
Primary source
TAIR:AT4G00190
Locus tag
AT4G00190
See related
Araport:AT4G00190
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
A. THALIANA PECTIN METHYLESTERASE 38; ATPME38; F6N15.23; F6N15_23; pectin methylesterase 38
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Genomic context

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See PME38 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (80433..82040, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Plant-specific transcription factor YABBY family protein Neighboring gene ncRNA Neighboring gene AT hook motif DNA-binding family protein Neighboring gene LOB domain-containing protein 31

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables enzyme inhibitor activity IEA
Inferred from Electronic Annotation
more info
  
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
  
involved_in pectin catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
pectin methylesterase 38
NP_191930.1
  • pectin methylesterase 38 (PME38); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, synergid; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 2963 Blast hits to 2921 proteins in 467 species: Archae - 10; Bacteria - 871; Metazoa - 1; Fungi - 198; Plants - 1837; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    80433..82040 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116236.1 → NP_191930.1  pectin methylesterase 38 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191930.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O81320
    UniProtKB/TrEMBL
    A0A654FKI9
    Conserved Domains (3) summary
    PLN02713
    Location:7 → 474
    PLN02713; Probable pectinesterase/pectinesterase inhibitor
    cd15798
    Location:7 → 140
    PMEI-like_3; Uncharacterized subfamily of plant invertase/pectin methylesterase inhibitor domains
    cl01911
    Location:164 → 458
    Pectinesterase; Pectinesterase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O81320.1

Gene LinkOut

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