U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

VPS28-1 vacuolar protein sorting-associated protein-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828241, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
VPS28-1
Official Full Name
vacuolar protein sorting-associated protein-like protein
Primary source
TAIR:AT4G21560
Locus tag
AT4G21560
See related
Araport:AT4G21560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17L22.20; vacuolar protein sorting 28; vacuolar protein sorting-associated protein 28 homolog 1; VPS28
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See VPS28-1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (11468666..11470569, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene sphingosine kinase 1 Neighboring gene ncRNA Neighboring gene VP1/ABI3-like 3 Neighboring gene organic solute transporter ostalpha protein (DUF300) Neighboring gene oxidoreductase, zinc-binding dehydrogenase family protein Neighboring gene endonuclease 4

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Multivesicular bodies mature from the trans-Golgi network/early endosome in Arabidopsis. Scheuring D, et al. Plant Cell, 2011 Sep. PMID 21934143, Free PMC Article
  2. The Arabidopsis ESCRT protein-protein interaction network. Shahriari M, et al. Plant Mol Biol, 2011 May. PMID 21442383
  3. The Arabidopsis elch mutant reveals functions of an ESCRT component in cytokinesis. Spitzer C, et al. Development, 2006 Dec. PMID 17090720
  4. Protein-Protein Interaction Network and Subcellular Localization of the Arabidopsis Thaliana ESCRT Machinery. Richardson LG, et al. Front Plant Sci, 2011. PMID 22639582, Free PMC Article
  5. Arabidopsis TRANSCURVATA1 encodes NUP58, a component of the nucleopore central channel. Ferrández-Ayela A, et al. PLoS One, 2013. PMID 23840761, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_001341499.1
NM_118276.4
NM_202856.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosome transport via multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ESCRT I complex ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in trans-Golgi network IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
vacuolar protein sorting-associated protein-like protein
NP_001320024.1
  • vacuolar protein sorting-associated protein 28 homolog 1 (VPS28-1); CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated, VPS28, N-terminal (InterPro:IPR017898), Vacuolar protein sorting-associated, VPS28, C-terminal (InterPro:IPR017899), Vacuolar protein sorting-associated, VPS28 (InterPro:IPR007143); BEST Arabidopsis thaliana protein match is: Vacuolar protein sorting-associated protein VPS28 family protein (TAIR:AT4G05000.2); Has 388 Blast hits to 387 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 146; Plants - 72; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
NP_193887.1
  • vacuolar protein sorting-associated protein 28 homolog 1 (VPS28-1); CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated, VPS28, N-terminal (InterPro:IPR017898), Vacuolar protein sorting-associated, VPS28, C-terminal (InterPro:IPR017899), Vacuolar protein sorting-associated, VPS28 (InterPro:IPR007143); BEST Arabidopsis thaliana protein match is: Vacuolar protein sorting-associated protein VPS28 family protein (TAIR:AT4G05000.2); Has 388 Blast hits to 387 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 146; Plants - 72; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
NP_974585.1
  • vacuolar protein sorting-associated protein 28 homolog 1 (VPS28-1); CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated, VPS28, N-terminal (InterPro:IPR017898), Vacuolar protein sorting-associated, VPS28, C-terminal (InterPro:IPR017899), Vacuolar protein sorting-associated, VPS28 (InterPro:IPR007143); BEST Arabidopsis thaliana protein match is: Vacuolar protein sorting-associated protein VPS28 family protein (TAIR:AT4G05000.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    11468666..11470569 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118276.4 → NP_193887.1  vacuolar protein sorting-associated protein-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193887.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O65421
    UniProtKB/TrEMBL
    A0A178UVB3, A0A5S9XUI4
    Conserved Domains (1) summary
    pfam03997
    Location:18 → 204
    VPS28; VPS28 protein

  2. NM_202856.3 → NP_974585.1  vacuolar protein sorting-associated protein-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974585.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O65421
    UniProtKB/TrEMBL
    A0A178UVB3, A0A5S9XUI4
    Conserved Domains (1) summary
    pfam03997
    Location:18 → 204
    VPS28; VPS28 protein

  3. NM_001341499.1 → NP_001320024.1  vacuolar protein sorting-associated protein-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O65421
    UniProtKB/TrEMBL
    A0A178UVB3, A0A5S9XUI4
    Conserved Domains (1) summary
    pfam03997
    Location:18 → 204
    VPS28; VPS28 protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O65421.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools