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EBS PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828303, updated on 18-Sep-2024

Summary

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Official Symbol
EBS
Official Full Name
PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein
Primary source
TAIR:AT4G22140
Locus tag
AT4G22140
See related
Araport:AT4G22140
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
EARLY BOLTING IN SHORT DAYS; F1N20.240; F1N20_240
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Genomic context

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See EBS in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (11727706..11730509, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ERD (early-responsive to dehydration stress) family protein Neighboring gene STRUBBELIG-receptor family 8 Neighboring gene UBA/UBX domain protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EARLY BOLTING IN SHORT DAYS is related to chromatin remodeling factors and regulates flowering in Arabidopsis by repressing FT. Piñeiro M, et al. Plant Cell, 2003 Jul. PMID 12837946, Free PMC Article
  2. early bolting in short days: an Arabidopsis mutation that causes early flowering and partially suppresses the floral phenotype of leafy. Gómez-Mena C, et al. Plant Cell, 2001 May. PMID 11340178, Free PMC Article
  3. Chromatin-dependent repression of the Arabidopsis floral integrator genes involves plant specific PHD-containing proteins. López-González L, et al. Plant Cell, 2014 Oct. PMID 25281686, Free PMC Article
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001036618.3
NM_001341530.1
NM_118335.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
  
enables methylated histone binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription cis-regulatory region binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of gene expression, epigenetic IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in negative regulation of long-day photoperiodism, flowering IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within positive regulation of flower development IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in post-embryonic development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of photoperiodism, flowering IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within seed germination IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein
NP_001031695.1
  • EARLY BOLTING IN SHORT DAYS (EBS); FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: positive regulation of flower development, regulation of transcription, DNA-dependent, seed germination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT4G04260.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001320030.1
  • EARLY BOLTING IN SHORT DAYS (EBS); FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: positive regulation of flower development, regulation of transcription, DNA-dependent, seed germination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT4G04260.1); Has 1958 Blast hits to 1898 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 1059; Fungi - 271; Plants - 475; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    11727706..11730509 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001036618.3 → NP_001031695.1  PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031695.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UYA0, A0A654FRR6
    Conserved Domains (2) summary
    cd04714
    Location:30 → 164
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
    cl22851
    Location:148 → 194
    PHD_SF; PHD finger superfamily

  2. NM_118335.5 → NP_193945.2  PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193945.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JL28, O65462, Q56W44, Q8H1R5
    UniProtKB/TrEMBL
    A0A654FRR6
    Conserved Domains (2) summary
    cd04714
    Location:30 → 164
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
    cl22851
    Location:148 → 194
    PHD_SF; PHD finger superfamily

  3. NM_001341530.1 → NP_001320030.1  PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JL28, O65462, Q56W44, Q8H1R5
    UniProtKB/TrEMBL
    A0A654FRR6
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4JL28.1

Gene LinkOut

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