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LOC8283689 pre-mRNA-splicing factor syf2 [ Ricinus communis (castor bean) ]

Gene ID: 8283689, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8283689
Gene description
pre-mRNA-splicing factor syf2
Locus tag
RCOM_0979410
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8283689 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 8 NC_063263.1 (3856706..3860487)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994378.1 (693872..697914)

Chromosome 8 - NC_063263.1Genomic Context describing neighboring genes Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene probable aquaporin PIP2-8 Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor syf2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063263.1 Reference ASM1957865v1

    Range
    3856706..3860487
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048378234.1 → XP_048234191.1  pre-mRNA-splicing factor syf2 isoform X1

  2. XM_002521245.4 → XP_002521291.1  pre-mRNA-splicing factor syf2 isoform X2

    See identical proteins and their annotated locations for XP_002521291.1

    UniProtKB/TrEMBL
    B9S5M2
    Conserved Domains (1) summary
    pfam08231
    Location:153 → 301
    SYF2; SYF2 splicing factor

  3. XM_048378235.1 → XP_048234192.1  pre-mRNA-splicing factor syf2 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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