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A20/AN1-like zinc finger family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828381, updated on 18-Sep-2024

Summary

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Official Full Name
A20/AN1-like zinc finger family protein
Primary source
TAIR:AT4G22820
Locus tag
AT4G22820
See related
Araport:AT4G22820
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7H19.10
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Genomic context

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Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_003075.7 (11987649..11989087, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Putative AT-hook DNA-binding family protein Neighboring gene ncRNA Neighboring gene YCF49-like protein Neighboring gene Sodium Bile acid symporter family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis stress associated protein 9 mediates biotic and abiotic stress responsive ABA signaling via the proteasome pathway. Kang M, et al. Plant Cell Environ, 2017 May. PMID 28039858
  2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. AtSAP9 regulates abiotic and biotic stress responses, possibly via the ubiquitination/proteasome pathway.[AtSAP9]
    Title: Arabidopsis stress associated protein 9 mediates biotic and abiotic stress responsive ABA signaling via the proteasome pathway.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_118411.4
NM_202865.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables ubiquitin protein ligase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within defense response to other organism IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within proteasome-mediated ubiquitin-dependent protein catabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within protein ubiquitination IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
A20/AN1-like zinc finger family protein
NP_194013.1
  • A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT4G12040.2); Has 1063 Blast hits to 1051 proteins in 151 species: Archae - 6; Bacteria - 0; Metazoa - 438; Fungi - 9; Plants - 483; Viruses - 6; Other Eukaryotes - 121 (source: NCBI BLink).
NP_974594.1
  • A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT4G12040.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    11987649..11989087 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118411.4 → NP_194013.1  A20/AN1-like zinc finger family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194013.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49663
    UniProtKB/TrEMBL
    A0A178V0C3, A0A7G2F2W6
    Conserved Domains (2) summary
    smart00154
    Location:117 → 154
    ZnF_AN1; AN1-like Zinc finger
    pfam01754
    Location:21 → 42
    zf-A20; A20-like zinc finger

  2. NM_202865.1 → NP_974594.1  A20/AN1-like zinc finger family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974594.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49663
    UniProtKB/TrEMBL
    A0A178V0C3, A0A7G2F2W6
    Conserved Domains (2) summary
    smart00154
    Location:117 → 154
    ZnF_AN1; AN1-like Zinc finger
    pfam01754
    Location:21 → 42
    zf-A20; A20-like zinc finger
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O49663.1

Gene LinkOut

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