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SNARE associated Golgi protein family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828384, updated on 18-Sep-2024

Summary

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Official Full Name
SNARE associated Golgi protein family
Primary source
TAIR:AT4G22850
Locus tag
AT4G22850
See related
Araport:AT4G22850
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7H19.30
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Genomic context

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Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (11993955..11996335)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene YCF49-like protein Neighboring gene Sodium Bile acid symporter family Neighboring gene Cell cycle regulated microtubule associated protein Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001160793.1
NM_118414.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SNARE associated Golgi protein family
NP_001154265.1
  • SNARE associated Golgi protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT4G12000.1); Has 1376 Blast hits to 1373 proteins in 368 species: Archae - 4; Bacteria - 671; Metazoa - 94; Fungi - 36; Plants - 289; Viruses - 0; Other Eukaryotes - 282 (source: NCBI BLink).
NP_194016.2
  • SNARE associated Golgi protein family; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT4G12000.1); Has 1827 Blast hits to 1824 proteins in 531 species: Archae - 7; Bacteria - 902; Metazoa - 120; Fungi - 93; Plants - 292; Viruses - 0; Other Eukaryotes - 413 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    11993955..11996335
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118414.4 → NP_194016.2  SNARE associated Golgi protein family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194016.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V1R0, A0A5S9XVL4, Q84JU5
    Conserved Domains (2) summary
    COG0586
    Location:81 → 282
    DedA; Uncharacterized membrane protein DedA, SNARE-associated domain [Function unknown]
    pfam09335
    Location:118 → 239
    SNARE_assoc; SNARE associated Golgi protein

  2. NM_001160793.1 → NP_001154265.1  SNARE associated Golgi protein family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154265.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V1R0, A0A5S9XVL4, F4JMN3
    Conserved Domains (1) summary
    pfam09335
    Location:118 → 239
    SNARE_assoc; SNARE associated Golgi protein
Nucleotide Protein
Heading Accession and Version

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