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LOC8284631 protein IWS1 homolog 1 [ Ricinus communis (castor bean) ]

Gene ID: 8284631, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8284631
Gene description
protein IWS1 homolog 1
Locus tag
RCOM_0865340
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8284631 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 5 NC_063260.1 (28323385..28327671, complement)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994348.1 (219923..224318)

Chromosome 5 - NC_063260.1Genomic Context describing neighboring genes Neighboring gene bifunctional pinoresinol-lariciresinol reductase Neighboring gene isoflavone reductase homolog Neighboring gene pyruvate kinase isozyme G, chloroplastic Neighboring gene protein NRT1/ PTR FAMILY 7.3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in brassinosteroid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein IWS1 homolog 1
Names
transcription factor IWS1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063260.1 Reference ASM1957865v1

    Range
    28323385..28327671 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002519803.3 → XP_002519849.1  protein IWS1 homolog 1

    See identical proteins and their annotated locations for XP_002519849.1

    UniProtKB/TrEMBL
    B9S1I4
    Conserved Domains (1) summary
    cl00146
    Location:241 → 472
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Nucleotide Protein
Heading Accession and Version

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