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TLP1 THAUMATIN-LIKE PROTEIN 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828519, updated on 18-Sep-2024

Summary

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Official Symbol
TLP1
Official Full Name
THAUMATIN-LIKE PROTEIN 1
Primary source
TAIR:AT4G24180
Locus tag
AT4G24180
See related
Araport:AT4G24180
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATTLP1; T22A6.10; T22A6_10; THAUMATIN-LIKE PROTEIN 1
Summary
Root-specific expression activated in response to rhizobacteria and ACC. Role in induced systemic resistance.
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Genomic context

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See TLP1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (12549700..12551378, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ATP binding microtubule motor family protein Neighboring gene kinesin-like protein Neighboring gene Chaperone protein htpG family protein Neighboring gene Transcription elongation factor (TFIIS) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Colonization of the Arabidopsis rhizosphere by fluorescent Pseudomonas spp. activates a root-specific, ethylene-responsive PR-5 gene in the vascular bundle. Léon-Kloosterziel KM, et al. Plant Mol Biol, 2005 Mar. PMID 15988566
  2. Thaumatin-like genes function in the control of both biotic stress signaling and ABA signaling pathways. Park EJ, et al. Biochem Biophys Res Commun, 2021 Aug 27. PMID 34130180
  3. New insights into the subcellular localization of Tubby-like proteins and their participation in the Arabidopsis-Piriformospora indica interaction. Reitz MU, et al. Plant Signal Behav, 2013 Aug. PMID 23733076, Free PMC Article
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Thaumatin-like genes function in the control of both biotic stress signaling and ABA signaling pathways.
    Title: Thaumatin-like genes function in the control of both biotic stress signaling and ABA signaling pathways.
  2. the involvement of another two AtTLPs in Arabidopsis-Piriformospora indica interaction, is reported.
    Title: New insights into the subcellular localization of Tubby-like proteins and their participation in the Arabidopsis-Piriformospora indica interaction.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_001341648.1
NM_001341651.1
NM_001341652.1
NM_118551.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
NOT involved_in induced systemic resistance IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within induced systemic resistance IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to bacterium IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in response to bacterium IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to ethylene IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in response to ethylene IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
THAUMATIN-LIKE PROTEIN 1
NP_001320053.1
  • THAUMATIN-LIKE PROTEIN 1 (TLP1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to ethylene stimulus, response to other organism, induced systemic resistance, response to bacterium; LOCATED IN: endomembrane system; EXPRESSED IN: root vascular system; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT4G38660.1); Has 1607 Blast hits to 1581 proteins in 180 species: Archae - 0; Bacteria - 47; Metazoa - 54; Fungi - 78; Plants - 1413; Viruses - 3; Other Eukaryotes - 12 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    12549700..12551378 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001341649.1 → NP_001328600.1  THAUMATIN-LIKE PROTEIN 1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B562, A0A7G2F0H3
    Conserved Domains (1) summary
    pfam00314
    Location:34 → 251
    Thaumatin; Thaumatin family

  2. NM_001341650.1 → NP_001328601.1  THAUMATIN-LIKE PROTEIN 1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B570, A0A654FS94

  3. NM_001341648.1 → NP_001320053.1  THAUMATIN-LIKE PROTEIN 1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UWR9, F4JQ53
    Conserved Domains (1) summary
    pfam00314
    Location:39 → 256
    Thaumatin; Thaumatin family

  4. NM_001341651.1 → NP_001328598.1  THAUMATIN-LIKE PROTEIN 1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B549, A0A654FS94

  5. NM_001341652.1 → NP_001328599.1  THAUMATIN-LIKE PROTEIN 1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UY63, A0A5S9XXI8
    Conserved Domains (1) summary
    pfam00314
    Location:34 → 251
    Thaumatin; Thaumatin family

  6. NM_118551.3 → NP_194149.2  THAUMATIN-LIKE PROTEIN 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194149.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A1P8B554, O22973, Q9STX6
    UniProtKB/TrEMBL
    A0A178UWR4
    Conserved Domains (1) summary
    pfam00314
    Location:39 → 256
    Thaumatin; Thaumatin family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A1P8B554.1

Gene LinkOut

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