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ABCB28 non-intrinsic ABC protein 8 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828650, updated on 18-Sep-2024

Summary

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Official Symbol
ABCB28
Official Full Name
non-intrinsic ABC protein 8
Primary source
TAIR:AT4G25450
Locus tag
AT4G25450
See related
Araport:AT4G25450
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8; AT4G25460; ATNAP8; ATP-binding cassette B28; NAP8; non-intrinsic ABC protein 8; T30C3.5
Summary
member of NAP subfamily
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Genomic context

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See ABCB28 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
16
Sequence:
Chromosome: 4; NC_003075.7 (13009690..13014085, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene tRNA-Lys Neighboring gene zinc finger WD40 repeat protein 1 Neighboring gene C-repeat/DRE binding factor 2 Neighboring gene ncRNA Neighboring gene dehydration response element B1A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis thaliana ABC protein superfamily, a complete inventory. Sánchez-Fernández R, et al. J Biol Chem, 2001 Aug 10. PMID 11346655
  2. Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana. Ferro M, et al. Mol Cell Proteomics, 2003 May. PMID 12766230
  3. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931
  4. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
  5. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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NM_001036637.2
NM_001084977.1
NM_118677.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables ATPase-coupled transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast envelope HDA PubMed 
located_in cytosol HDA PubMed 

General protein information

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Preferred Names
non-intrinsic ABC protein 8
NP_001031714.1
  • non-intrinsic ABC protein 8 (NAP8); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140); BEST Arabidopsis thaliana protein match is: transporter associated with antigen processing protein 2 (TAIR:AT5G39040.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001078446.1
  • non-intrinsic ABC protein 8 (NAP8); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: transporter associated with antigen processing protein 2 (TAIR:AT5G39040.1); Has 420091 Blast hits to 380969 proteins in 4118 species: Archae - 7380; Bacteria - 326284; Metazoa - 9897; Fungi - 7311; Plants - 5559; Viruses - 14; Other Eukaryotes - 63646 (source: NCBI BLink).
NP_194275.2
  • non-intrinsic ABC protein 8 (NAP8); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: transporter associated with antigen processing protein 2 (TAIR:AT5G39040.1); Has 416986 Blast hits to 378266 proteins in 4104 species: Archae - 7380; Bacteria - 322963; Metazoa - 9904; Fungi - 7465; Plants - 5560; Viruses - 14; Other Eukaryotes - 63700 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    13009690..13014085 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118677.5 → NP_194275.2  non-intrinsic ABC protein 8 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194275.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O65615, Q67ZJ9, Q67ZN9, Q682F1, Q8LPQ6
    UniProtKB/TrEMBL
    A0A654FSM7, A0A7G2F7B6
    Conserved Domains (1) summary
    COG1132
    Location:92 → 712
    MdlB; ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]

  2. NM_001036637.2 → NP_001031714.1  non-intrinsic ABC protein 8 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031714.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2F7B6
    Conserved Domains (3) summary
    COG1132
    Location:92 → 617
    MdlB; ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]
    cl00549
    Location:113 → 381
    ABC_membrane; ABC transporter transmembrane region
    cl21455
    Location:472 → 617
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  3. NM_001084977.1 → NP_001078446.1  non-intrinsic ABC protein 8 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078446.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JSM3
    Conserved Domains (3) summary
    COG1122
    Location:303 → 530
    EcfA2; Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only]
    cl00549
    Location:6 → 212
    ABC_membrane; ABC transporter transmembrane region
    cl21455
    Location:303 → 540
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8LPQ6.1

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