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SLK1 SEUSS-like 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828657, updated on 18-Sep-2024

Summary

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Official Symbol
SLK1
Official Full Name
SEUSS-like 1
Primary source
TAIR:AT4G25520
Locus tag
AT4G25520
See related
Araport:AT4G25520
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
M7J2.110; M7J2_110; SEUSS-like 1
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Genomic context

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See SLK1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Sequence:
Chromosome: 4; NC_003075.7 (13032157..13036471, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene SEUSS-like 3 Neighboring gene FLOWERING WAGENINGEN Neighboring gene homolog of DNA mismatch repair protein MSH3 Neighboring gene Cleavage/polyadenylation specificity factor, 25kDa subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SEUSS and SEUSS-LIKE transcriptional adaptors regulate floral and embryonic development in Arabidopsis. Bao F, et al. Plant Physiol, 2010 Feb. PMID 20007451, Free PMC Article
  2. Involvement of co-repressor LUH and the adapter proteins SLK1 and SLK2 in the regulation of abiotic stress response genes in Arabidopsis. Shrestha B, et al. BMC Plant Biol, 2014 Feb 24. PMID 24564815, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. that SLK1, SLK2 and LUH form a co-repressor complex.
    Title: Involvement of co-repressor LUH and the adapter proteins SLK1 and SLK2 in the regulation of abiotic stress response genes in Arabidopsis.
  2. SLK1 shares redundant function with SEU during gynoecium and ovule development. SEU and SLK1 are required for optimal auxin signaling during root and gynoecial development.
    Title: SEUSS and SEUSS-LIKE transcriptional adaptors regulate floral and embryonic development in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001341749.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within embryo development ending in seed dormancy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within gynoecium development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in negative regulation of response to salt stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within plant ovule development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of response to osmotic stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SEUSS-like 1
NP_001320064.1
  • SEUSS-like 1 (SLK1); BEST Arabidopsis thaliana protein match is: SEUSS-like 3 (TAIR:AT4G25515.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    13032157..13036471 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118684.9 → NP_194282.2  SEUSS-like 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194282.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O65609, Q0WVM7, Q9M0K8
    UniProtKB/TrEMBL
    A0A178UY11, A0A5S9XVR6, A0A654FST1
    Conserved Domains (1) summary
    pfam01803
    Location:192 → 452
    LIM_bind; LIM-domain binding protein

  2. NM_001341749.1 → NP_001320064.1  SEUSS-like 1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O65609, Q0WVM7, Q9M0K8
    UniProtKB/TrEMBL
    A0A178UY11, A0A5S9XVR6, A0A654FST1
    Conserved Domains (1) summary
    pfam01803
    Location:192 → 452
    LIM_bind; LIM-domain binding protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0WVM7.1

Gene LinkOut

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