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Uncharacterized protein family (UPF0497) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828688, updated on 18-Sep-2024

Summary

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Official Full Name
Uncharacterized protein family (UPF0497)
Primary source
TAIR:AT4G25830
Locus tag
AT4G25830
See related
Araport:AT4G25830
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CASP-like protein 2C1; CASPL2C1; F14M19.9
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (13133402..13135286)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene xyloglucan endotransglycosylase 6 Neighboring gene xyloglucan endotransglucosylase/hydrolase 14 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene glycerol-3-phosphatase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_118715.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Uncharacterized protein family (UPF0497)
NP_567729.1
  • Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT2G35760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    13133402..13135286
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118715.4 → NP_567729.1  Uncharacterized protein family (UPF0497) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567729.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L8U9, Q9SW02
    UniProtKB/TrEMBL
    A0A178UTE2, A0A5S9XVU6
    Conserved Domains (1) summary
    pfam04535
    Location:3 → 147
    DUF588; Domain of unknown function (DUF588)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8L8U9.1

Gene LinkOut

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