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PSD3 phosphatidylserine decarboxylase 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828703, updated on 18-Sep-2024

Summary

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Official Symbol
PSD3
Official Full Name
phosphatidylserine decarboxylase 3
Primary source
TAIR:AT4G25970
Locus tag
AT4G25970
See related
Araport:AT4G25970
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F20B18.80; F20B18_80; phosphatidylserine decarboxylase 3
Summary
Encodes the major form of the two non-mitochondrail phosphatidylserine decarboxylase. Located at the ER.
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Genomic context

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See PSD3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
21
Sequence:
Chromosome: 4; NC_003075.7 (13184114..13189435)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene vacuolar ATP synthase G3 Neighboring gene P-glycoprotein 2 Neighboring gene peroxidase superfamily protein Neighboring gene CCT motif family protein Neighboring gene RNA-binding KH domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Deficiency in phosphatidylserine decarboxylase activity in the psd1 psd2 psd3 triple mutant of Arabidopsis affects phosphatidylethanolamine accumulation in mitochondria. Nerlich A, et al. Plant Physiol, 2007 Jun. PMID 17449644, Free PMC Article
  2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A significant amount of mitochondrial phosphatidylethanolamine is derived from the phosphatidylserine decarboxylase reaction in the endomembrane system.
    Title: Deficiency in phosphatidylserine decarboxylase activity in the psd1 psd2 psd3 triple mutant of Arabidopsis affects phosphatidylethanolamine accumulation in mitochondria.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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NM_118730.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables phosphatidylserine decarboxylase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables phosphatidylserine decarboxylase activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylethanolamine biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylserine decarboxylase 3
NP_567736.3
  • phosphatidylserine decarboxylase 3 (PSD3); FUNCTIONS IN: phosphatidylserine decarboxylase activity; INVOLVED IN: N-terminal protein myristoylation, phospholipid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), Phosphatidylserine decarboxylase-related (InterPro:IPR003817), EF-HAND 2 (InterPro:IPR018249), Phosphatidylserine decarboxylase (InterPro:IPR005221); BEST Arabidopsis thaliana protein match is: phosphatidylserine decarboxylase 2 (TAIR:AT5G57190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    13184114..13189435
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118730.4 → NP_567736.3  phosphatidylserine decarboxylase 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567736.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A4GNA8, Q9SZH1
    UniProtKB/TrEMBL
    A0A178UYW2, A0A5S9XWT3, A0A654FSU3
    Conserved Domains (1) summary
    PLN02964
    Location:1 → 635
    PLN02964; phosphatidylserine decarboxylase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A4GNA8.1

Gene LinkOut

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