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RMA3 RING membrane-anchor 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828856, updated on 18-Sep-2024

Summary

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Official Symbol
RMA3
Official Full Name
RING membrane-anchor 3
Primary source
TAIR:AT4G27470
Locus tag
AT4G27470
See related
Araport:AT4G27470
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATRMA3; F27G19.70; F27G19_70; RING membrane-anchor 3
Summary
Encodes a RING finger E3 ubiquitin ligase.
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Genomic context

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See RMA3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_003075.7 (13734922..13736518)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene protochlorophyllide oxidoreductase B Neighboring gene aluminum induced protein with YGL and LRDR motifs Neighboring gene Cystathionine beta-synthase (CBS) family protein Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein Neighboring gene 3'-5'-exoribonuclease family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of three Arabidopsis homologs of human RING membrane anchor E3 ubiquitin ligase. Son O, et al. Plant Cell Rep, 2009 Apr. PMID 19224217
  2. The Chinese wild grapevine (Vitis pseudoreticulata) E3 ubiquitin ligase Erysiphe necator-induced RING finger protein 1 (EIRP1) activates plant defense responses by inducing proteolysis of the VpWRKY11 transcription factor. Yu Y, et al. New Phytol, 2013 Nov. PMID 23905547
  3. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. RMA1, RMA2 and RMA3 all have E3 ubiquitin ligase activity and are localized to the endoplasmic reticulum. [RMA3]
    Title: Characterization of three Arabidopsis homologs of human RING membrane anchor E3 ubiquitin ligase.
Submit: New GeneRIF Correction

General gene information

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NM_118882.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin-protein transferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING membrane-anchor 3
NP_194477.2
  • RING membrane-anchor 3 (RMA3); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING membrane-anchor 1 (TAIR:AT4G03510.2); Has 2828 Blast hits to 2826 proteins in 265 species: Archae - 0; Bacteria - 0; Metazoa - 1348; Fungi - 459; Plants - 695; Viruses - 22; Other Eukaryotes - 304 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    13734922..13736518
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118882.3 → NP_194477.2  RING membrane-anchor 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194477.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GUK7, Q9SZS2
    UniProtKB/TrEMBL
    A0A178V4H3, A0A5S9XWF7, A0A654FT94
    Conserved Domains (1) summary
    PLN03208
    Location:37 → 228
    PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8GUK7.1

Gene LinkOut

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