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Heavy metal transport/detoxification superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828869, updated on 18-Sep-2024

Summary

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Official Full Name
Heavy metal transport/detoxification superfamily protein
Primary source
TAIR:AT4G27590
Locus tag
AT4G27590
See related
Araport:AT4G27590
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T29A15.80; T29A15_80
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Genomic context

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Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (13771089..13772594)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol transfer SFH5-like protein Neighboring gene SPFH/Band 7/PHB domain-containing membrane-associated protein family Neighboring gene WEB family protein (DUF827) Neighboring gene pseudo Neighboring gene pfkB-like carbohydrate kinase family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The RNA helicases AtMTR4 and HEN2 target specific subsets of nuclear transcripts for degradation by the nuclear exosome in Arabidopsis thaliana. Lange H, et al. PLoS Genet, 2014 Aug. PMID 25144737, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001160799.1
NM_118895.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Heavy metal transport/detoxification superfamily protein
NP_001154271.1
  • Heavy metal transport/detoxification superfamily protein; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT3G56891.1); Has 739 Blast hits to 739 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 735; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_567779.1
  • Heavy metal transport/detoxification superfamily protein; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT3G56891.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    13771089..13772594
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118895.2 → NP_567779.1  Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567779.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V1I8, F4JJP0, Q8LG12
    Conserved Domains (1) summary
    cd00371
    Location:19 → 78
    HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...

  2. NM_001160799.1 → NP_001154271.1  Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154271.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FTB3, F4JJN9
    Conserved Domains (1) summary
    cd00371
    Location:19 → 78
    HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
Nucleotide Protein
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