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sks10 SKU5 similar 10 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828925, updated on 18-Sep-2024

Summary

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Official Symbol
sks10
Official Full Name
SKU5 similar 10
Primary source
TAIR:AT4G28090
Locus tag
AT4G28090
See related
Araport:AT4G28090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
SKU5 similar 10; SKU5 similar 10; T13J8.200; T13J8_200
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Genomic context

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See sks10 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Sequence:
Chromosome: 4; NC_003075.7 (13961888..13964229, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Low temperature and salt responsive protein family Neighboring gene uncharacterized protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_118949.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SKU5 similar 10
NP_194538.1
  • SKU5 similar 10 (sks10); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 9 (TAIR:AT4G38420.1); Has 5723 Blast hits to 5680 proteins in 1067 species: Archae - 8; Bacteria - 1783; Metazoa - 293; Fungi - 2175; Plants - 1268; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    13961888..13964229 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118949.1 → NP_194538.1  SKU5 similar 10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194538.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UTU1, Q9SUD0
    Conserved Domains (2) summary
    PLN02792
    Location:12 → 547
    PLN02792; oxidoreductase
    cl19115
    Location:28 → 144
    Cupredoxin; Cupredoxin superfamily
Nucleotide Protein
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