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NPGR2 no pollen germination related 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828978, updated on 18-Sep-2024

Summary

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Official Symbol
NPGR2
Official Full Name
no pollen germination related 2
Primary source
TAIR:AT4G28600
Locus tag
AT4G28600
See related
Araport:AT4G28600
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
no pollen germination related 2; T5F17.50; T5F17_50
Summary
encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits.
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Genomic context

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See NPGR2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Sequence:
Chromosome: 4; NC_003075.7 (14129180..14132869)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene magnesium transport 5 Neighboring gene polyadenylate-binding protein 2-binding protein Neighboring gene phosphate starvation response 1 Neighboring gene ABC transporter of the mitochondrion 2 Neighboring gene ABC transporter of the mitochondrion 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A calmodulin-binding protein from Arabidopsis has an essential role in pollen germination. Golovkin M, et al. Proc Natl Acad Sci U S A, 2003 Sep 2. PMID 12928497, Free PMC Article
  2. A nanodomain-anchored scaffolding complex is required for the function and localization of phosphatidylinositol 4-kinase alpha in plants. Noack LC, et al. Plant Cell, 2022 Jan 20. PMID 34010411, Free PMC Article
  3. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_119002.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calmodulin binding TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic side of plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in membrane microdomain IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane HDA PubMed 
is_active_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
no pollen germination related 2
NP_194589.2
  • no pollen germination related 2 (NPGR2); FUNCTIONS IN: calmodulin binding; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT2G43040.1); Has 2060 Blast hits to 1763 proteins in 357 species: Archae - 278; Bacteria - 547; Metazoa - 329; Fungi - 78; Plants - 247; Viruses - 0; Other Eukaryotes - 581 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    14129180..14132869
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001341925.1 → NP_001329155.1  no pollen germination related 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q66GN3, Q9M0H1
    UniProtKB/TrEMBL
    A0A178V549, A0A654FTN1
    Conserved Domains (2) summary
    COG0457
    Location:470 → 659
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:629 → 654
    TPR; TPR repeat [structural motif]

  2. NM_001341926.1 → NP_001329156.1  no pollen germination related 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B6U4, A0A654FTN1
    Conserved Domains (2) summary
    COG0457
    Location:464 → 664
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:634 → 659
    TPR; TPR repeat [structural motif]

  3. NM_119002.6 → NP_194589.2  no pollen germination related 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194589.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q66GN3, Q9M0H1
    UniProtKB/TrEMBL
    A0A178V549, A0A654FTN1
    Conserved Domains (2) summary
    COG0457
    Location:470 → 659
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:629 → 654
    TPR; TPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q66GN3.1

Gene LinkOut

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