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TRM20 methyl-coenzyme M reductase II subunit gamma, putative (DUF3741) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828997, updated on 18-Sep-2024

Summary

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Official Symbol
TRM20
Official Full Name
methyl-coenzyme M reductase II subunit gamma, putative (DUF3741)
Primary source
TAIR:AT4G28760
Locus tag
AT4G28760
See related
Araport:AT4G28760
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F16A16.130; F16A16_130; TON1 Recruiting Motif 20
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Genomic context

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See TRM20 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Sequence:
Chromosome: 4; NC_003075.7 (14207460..14212050)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Glutaredoxin family protein Neighboring gene LOW PSII ACCUMULATION-like protein Neighboring gene Photosystem I reaction centre subunit IV / PsaE protein Neighboring gene uncharacterized protein Neighboring gene Tetraspanin family protein Neighboring gene uncharacterized protein Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The C-terminal region (640-967) of Arabidopsis CPL1 interacts with the abiotic stress- and ABA-responsive transcription factors. Bang WY, et al. Biochem Biophys Res Commun, 2008 Aug 8. PMID 18541146
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_119020.3
NM_202904.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
methyl-coenzyme M reductase II subunit gamma, putative (DUF3741)
NP_567819.1
  • Protein of unknown function (DUF3741); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT2G20240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_974633.1
  • Protein of unknown function (DUF3741); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT2G20240.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    14207460..14212050
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_202904.2 → NP_974633.1  methyl-coenzyme M reductase II subunit gamma, putative (DUF3741) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974633.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V4K9, Q949M4
    Conserved Domains (2) summary
    pfam12552
    Location:204 → 248
    DUF3741; Protein of unknown function (DUF3741)
    pfam14309
    Location:752 → 917
    DUF4378; Domain of unknown function (DUF4378)

  2. NM_119020.3 → NP_567819.1  methyl-coenzyme M reductase II subunit gamma, putative (DUF3741) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567819.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V4K9, Q949M4
    Conserved Domains (2) summary
    pfam12552
    Location:204 → 248
    DUF3741; Protein of unknown function (DUF3741)
    pfam14309
    Location:752 → 917
    DUF4378; Domain of unknown function (DUF4378)
Nucleotide Protein
Heading Accession and Version

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