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HIT-type Zinc finger family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829003, updated on 18-Sep-2024

Summary

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Official Full Name
HIT-type Zinc finger family protein
Primary source
TAIR:AT4G28820
Locus tag
AT4G28820
See related
Araport:AT4G28820
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F16A16.70; F16A16_70
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Genomic context

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Location:
chromosome: 4
Exon count:
9
Sequence:
Chromosome: 4; NC_003075.7 (14229408..14232380, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene mediator of RNA polymerase II transcription subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001036664.2
NM_001341945.1
NM_001341946.1
NM_119026.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
HIT-type Zinc finger family protein
NP_001031741.1
  • HIT-type Zinc finger family protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_194611.2
  • HIT-type Zinc finger family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 375 Blast hits to 372 proteins in 152 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi - 117; Plants - 47; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    14229408..14232380 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001341943.1 → NP_001329310.1  HIT-type Zinc finger family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B7B4, A0A5S9XXP5

  2. NM_001341944.1 → NP_001329312.1  HIT-type Zinc finger family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V0K0, A0A1P8B7B3

  3. NM_001036664.2 → NP_001031741.1  HIT-type Zinc finger family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031741.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V0K0, Q67Y48
    Conserved Domains (1) summary
    pfam04438
    Location:6 → 35
    zf-HIT; HIT zinc finger

  4. NM_001341945.1 → NP_001329311.1  HIT-type Zinc finger family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UYH7, A0A1P8B7B0, A0A384LKP4

  5. NM_119026.3 → NP_194611.2  HIT-type Zinc finger family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194611.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XXP5, Q1RKP4
    Conserved Domains (1) summary
    pfam04438
    Location:6 → 35
    zf-HIT; HIT zinc finger

  6. NM_001341946.1 → NP_001329313.1  HIT-type Zinc finger family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V0V7, A0A1P8B7B1, A0A384LF34
Nucleotide Protein
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