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HAD superfamily, subfamily IIIB acid phosphatase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829048, updated on 18-Sep-2024

Summary

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Official Full Name
HAD superfamily, subfamily IIIB acid phosphatase
Primary source
TAIR:AT4G29270
Locus tag
AT4G29270
See related
Araport:AT4G29270
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17A13.90; F17A13_90
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (14423627..14424898, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene HAD superfamily, subfamily IIIB acid phosphatase Neighboring gene low-molecular-weight cysteine-rich 23 Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_119071.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables acid phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
HAD superfamily, subfamily IIIB acid phosphatase
NP_194656.1
  • HAD superfamily, subfamily IIIB acid phosphatase; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT4G29260.1); Has 719 Blast hits to 714 proteins in 195 species: Archae - 0; Bacteria - 324; Metazoa - 0; Fungi - 0; Plants - 383; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    14423627..14424898 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119071.4 → NP_194656.1  HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194656.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XWZ8, A0A654FTV4, Q9M0F4
    Conserved Domains (1) summary
    pfam03767
    Location:45 → 256
    Acid_phosphat_B; HAD superfamily, subfamily IIIB (Acid phosphatase)
Nucleotide Protein
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