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signal recognition particle receptor alpha subunit family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829183, updated on 18-Sep-2024

Summary

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Official Full Name
signal recognition particle receptor alpha subunit family protein
Primary source
TAIR:AT4G30600
Locus tag
AT4G30600
See related
Araport:AT4G30600
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17I23.60; F17I23_60
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Genomic context

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Location:
chromosome: 4
Exon count:
9
Sequence:
Chromosome: 4; NC_003075.7 (14937840..14941208, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Phospholipid/glycerol acyltransferase family protein Neighboring gene early nodulin-like protein 12 Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ncRNA Neighboring gene Putative BCR, YbaB family COG0718

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
  2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001342015.1
NM_119206.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables signal recognition particle binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in SRP-dependent cotranslational protein targeting to membrane IEA
Inferred from Electronic Annotation
more info
  
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum HDA PubMed 
part_of signal recognition particle receptor complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
signal recognition particle receptor alpha subunit family protein
NP_194789.1
  • signal recognition particle receptor alpha subunit family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, signal recognition particle binding, GTP binding, GTPase activity, nucleotide binding; INVOLVED IN: intracellular protein transport, protein targeting, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: endoplasmic reticulum, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle receptor, alpha subunit, N-terminal (InterPro:IPR007222), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897); BEST Arabidopsis thaliana protein match is: signal recognition particle 54 kDa subunit (TAIR:AT1G15310.1); Has 16825 Blast hits to 16740 proteins in 2884 species: Archae - 472; Bacteria - 10592; Metazoa - 551; Fungi - 433; Plants - 279; Viruses - 3; Other Eukaryotes - 4495 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    14937840..14941208 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119206.5 → NP_194789.1  signal recognition particle receptor alpha subunit family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194789.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UUJ7, A0A384K8N2, A0A7G2F6X8, Q9M0A0
    Conserved Domains (3) summary
    cd17876
    Location:441 → 632
    SRalpha_C; C-terminal domain of signal recognition particle receptor alpha subunit
    pfam02881
    Location:330 → 399
    SRP54_N; SRP54-type protein, helical bundle domain
    pfam04086
    Location:28 → 301
    SRP-alpha_N; Signal recognition particle, alpha subunit, N-terminal

  2. NM_001342015.1 → NP_001329356.1  signal recognition particle receptor alpha subunit family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UUJ7, A0A384K8N2, A0A7G2F6X8, Q9M0A0
    Conserved Domains (3) summary
    cd17876
    Location:441 → 632
    SRalpha_C; C-terminal domain of signal recognition particle receptor alpha subunit
    pfam02881
    Location:330 → 399
    SRP54_N; SRP54-type protein, helical bundle domain
    pfam04086
    Location:28 → 301
    SRP-alpha_N; Signal recognition particle, alpha subunit, N-terminal
Nucleotide Protein
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