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PPR superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829234, updated on 18-Sep-2024

Summary

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Official Full Name
PPR superfamily protein
Primary source
TAIR:AT4G31070
Locus tag
AT4G31070
See related
Araport:AT4G31070
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F6I18.20; F6I18_20
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (15117756..15120608, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Biotin/lipoate A/B protein ligase family Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene uncharacterized protein Neighboring gene tRNA-Arg Neighboring gene integral membrane metal-binding family protein (DUF2296)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
PPR superfamily protein
NP_001320098.1
  • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G33990.1); Has 38861 Blast hits to 13091 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 61; Plants - 38225; Viruses - 0; Other Eukaryotes - 470 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    15117756..15120608 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342052.1 → NP_001320098.1  PPR superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JR67, O65543
    UniProtKB/TrEMBL
    A0A5S9XXU1, A0A654FUF2
    Conserved Domains (2) summary
    PLN03077
    Location:36 → 608
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:331 → 358
    PPR; PPR repeat [structural motif]

  2. NM_001342053.1 → NP_001328866.1  PPR superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JR67, O65543
    UniProtKB/TrEMBL
    A0A5S9XXU1, A0A654FUF2
    Conserved Domains (2) summary
    PLN03077
    Location:36 → 608
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:331 → 358
    PPR; PPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O65543.2

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