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DUF1997 family protein, putative (DUF1997) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829239, updated on 18-Sep-2024

Summary

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Official Full Name
DUF1997 family protein, putative (DUF1997)
Primary source
TAIR:AT4G31115
Locus tag
AT4G31115
See related
Araport:AT4G31115
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 4
Exon count:
6
Sequence:
Chromosome: 4; NC_003075.7 (15130075..15132035)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene wall-associated kinase Neighboring gene Wall-associated kinase family protein Neighboring gene SHK1 binding protein 1 Neighboring gene keratin-associated protein (DUF1218) Neighboring gene O-Glycosyl hydrolases family 17 protein Neighboring gene endonuclease V family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001125612.1
NM_179147.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DUF1997 family protein, putative (DUF1997)
NP_001119084.1
  • Protein of unknown function (DUF1997); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1997 (InterPro:IPR018971); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1997) (TAIR:AT5G04440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_849478.1
  • Protein of unknown function (DUF1997); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1997 (InterPro:IPR018971); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1997) (TAIR:AT5G04440.1); Has 178 Blast hits to 178 proteins in 45 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    15130075..15132035
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001125612.1 → NP_001119084.1  DUF1997 family protein, putative (DUF1997) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119084.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UU49, B3H5W4
    Conserved Domains (1) summary
    pfam09366
    Location:103 → 262
    DUF1997; Protein of unknown function (DUF1997)

  2. NM_179147.1 → NP_849478.1  DUF1997 family protein, putative (DUF1997) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849478.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UWD2, Q8RY26
    Conserved Domains (1) summary
    pfam09366
    Location:79 → 238
    DUF1997; Protein of unknown function (DUF1997)
Nucleotide Protein
Heading Accession and Version

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