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Transcriptional factor B3 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829290, updated on 18-Sep-2024

Summary

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Official Full Name
Transcriptional factor B3 family protein
Primary source
TAIR:AT4G31620
Locus tag
AT4G31620
See related
Araport:AT4G31620
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28M20.190; F28M20_190; REM36; reproductive meristem 36
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Genomic context

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Location:
chromosome: 4
Exon count:
6
Sequence:
Chromosome: 4; NC_003075.7 (15322395..15324720, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene UDP-N-acetylglucosamine (UAA) transporter family Neighboring gene Transcriptional factor B3 family protein Neighboring gene Transcriptional factor B3 family protein Neighboring gene Transcriptional factor B3 family protein Neighboring gene transcriptional factor B3 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. REM34 and REM35 Control Female and Male Gametophyte Development in Arabidopsis thaliana. Caselli F, et al. Front Plant Sci, 2019. PMID 31708954, Free PMC Article
  2. A user-friendly platform for yeast two-hybrid library screening using next generation sequencing. Erffelinck ML, et al. PLoS One, 2018. PMID 30576311, Free PMC Article
  3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001342100.1
NM_001342101.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within megagametogenesis IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within pollen development IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Transcriptional factor B3 family protein
NP_001320106.1
  • Transcriptional factor B3 family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT4G31615.1); Has 320 Blast hits to 174 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 320; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    15322395..15324720 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342100.1 → NP_001320106.1  Transcriptional factor B3 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V075, A0A384KNK9, A0A5S9XXN4, G0XQD3
    Conserved Domains (2) summary
    cd10017
    Location:14 → 99
    B3_DNA; Plant-specific B3-DNA binding domain
    smart01019
    Location:286 → 381
    B3; B3 DNA binding domain

  2. NM_001342101.1 → NP_001328899.1  Transcriptional factor B3 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B628, A0A5S9XXN4
Nucleotide Protein
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