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nuclear pore complex Nup85-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829427, updated on 18-Sep-2024

Summary

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Official Full Name
nuclear pore complex Nup85-like protein
Primary source
TAIR:AT4G32910
Locus tag
AT4G32910
See related
Araport:AT4G32910
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 4
Exon count:
18
Sequence:
Chromosome: 4; NC_003075.7 (15881245..15885518)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene GATA transcription factor 9 Neighboring gene Peptidyl-tRNA hydrolase II (PTH2) family protein Neighboring gene glutamyl-tRNA(Gln) amidotransferase subunit C Neighboring gene glycine-rich protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An Arabidopsis Nucleoporin NUP85 modulates plant responses to ABA and salt stress. Zhu Y, et al. PLoS Genet, 2017 Dec. PMID 29232718, Free PMC Article
  2. Nucleocytoplasmic trafficking is essential for BAK1- and BKK1-mediated cell-death control. Du J, et al. Plant J, 2016 Feb. PMID 26775605
  3. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
  4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_119444.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within mRNA export from nucleus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to abscisic acid IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear envelope IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
nuclear pore complex Nup85-like protein
NP_567908.1
  • CONTAINS InterPro DOMAIN/s: Nuclear pore complex protein, Nucleoporin Nup85-like (InterPro:IPR011502); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    15881245..15885518
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119444.4 → NP_567908.1  nuclear pore complex Nup85-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567908.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8RXH2, Q9ASW9
    UniProtKB/TrEMBL
    A0A178V2H2, A0A5S9XY33, A0A7G2F5J0
    Conserved Domains (1) summary
    pfam07575
    Location:73 → 677
    Nucleopor_Nup85; Nup85 Nucleoporin
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8RXH2.1

Gene LinkOut

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