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PME44 pectin methylesterase 44 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829458, updated on 18-Sep-2024

Summary

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Official Symbol
PME44
Official Full Name
pectin methylesterase 44
Primary source
TAIR:AT4G33220
Locus tag
AT4G33220
See related
Araport:AT4G33220
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
A. THALIANA PECTIN METHYLESTERASE 44; ATPME44; F4I10.150; F4I10_150; pectin methylesterase 44
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Genomic context

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See PME44 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (16022269..16026428)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene myosin Neighboring gene F-box family protein Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily Neighboring gene 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A Neighboring gene ncRNA Neighboring gene eukaryotic translation initiation factor 3K

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis PECTIN METHYLESTERASEs contribute to immunity against Pseudomonas syringae. Bethke G, et al. Plant Physiol, 2014 Feb. PMID 24367018, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001342204.1
NM_119476.7

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables enzyme inhibitor activity IEA
Inferred from Electronic Annotation
more info
  
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within defense response to Gram-negative bacterium IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in pectin catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
pectin methylesterase 44
NP_567917.4
  • pectin methylesterase 44 (PME44); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT3G43270.1); Has 2773 Blast hits to 2721 proteins in 324 species: Archae - 6; Bacteria - 597; Metazoa - 1; Fungi - 196; Plants - 1948; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    16022269..16026428
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119476.7 → NP_567917.4  pectin methylesterase 44 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567917.4

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A1L4Y3, Q56WM4, Q94JL8, Q9SMY7
    UniProtKB/TrEMBL
    A0A178V0Y5, A0A5S9Y0E0
    Conserved Domains (3) summary
    PLN02201
    Location:1 → 525
    PLN02201; probable pectinesterase/pectinesterase inhibitor
    cd15799
    Location:2 → 156
    PMEI-like_4; plant invertase/pectin methylesterase inhibitor domain-containing protein
    pfam01095
    Location:212 → 509
    Pectinesterase; Pectinesterase

  2. NM_001342204.1 → NP_001328318.1  pectin methylesterase 44 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B4B4
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SMY7.2

Gene LinkOut

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