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metallo-beta-lactamase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829493, updated on 18-Sep-2024

Summary

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Official Full Name
metallo-beta-lactamase family protein
Primary source
TAIR:AT4G33540
Locus tag
AT4G33540
See related
Araport:AT4G33540
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T16L1.30; T16L1_30
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Genomic context

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Location:
chromosome: 4
Exon count:
12
Sequence:
Chromosome: 4; NC_003075.7 (16130593..16133969)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Protein phosphatase 2C family protein Neighboring gene 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase Neighboring gene P-type ATP-ase 1 Neighboring gene K+ uptake permease 5 Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene Wound-responsive family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A mutant of the Arabidopsis phosphate transporter PHT1;1 displays enhanced arsenic accumulation. Catarecha P, et al. Plant Cell, 2007 Mar. PMID 17400898, Free PMC Article
  2. A split-ubiquitin yeast two-hybrid screen to examine the substrate specificity of atToc159 and atToc132, two Arabidopsis chloroplast preprotein import receptors. Dutta S, et al. PLoS One, 2014. PMID 24736607, Free PMC Article
  3. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001342220.1
NM_001342221.1
NM_119509.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within response to arsenic-containing substance IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
metallo-beta-lactamase family protein
NP_195080.2
  • metallo-beta-lactamase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: response to arsenic, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279); Has 1592 Blast hits to 1592 proteins in 436 species: Archae - 145; Bacteria - 835; Metazoa - 30; Fungi - 10; Plants - 78; Viruses - 0; Other Eukaryotes - 494 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    16130593..16133969
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119509.5 → NP_195080.2  metallo-beta-lactamase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195080.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XYR1, A0A654FV52, Q8RWE1
    Conserved Domains (2) summary
    cd07727
    Location:147 → 324
    YmaE-like_MBL-fold; uncharacterized subgroup which includes Bacillus subtilis YmaE and related proteins; MBL-fold metallo hydrolase domain
    pfam13370
    Location:68 → 122
    Fer4_13; 4Fe-4S single cluster domain of Ferredoxin I

  2. NM_001342220.1 → NP_001328731.1  metallo-beta-lactamase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XYR1, A0A654FV52, Q8RWE1
    Conserved Domains (2) summary
    cd07727
    Location:147 → 324
    YmaE-like_MBL-fold; uncharacterized subgroup which includes Bacillus subtilis YmaE and related proteins; MBL-fold metallo hydrolase domain
    pfam13370
    Location:68 → 122
    Fer4_13; 4Fe-4S single cluster domain of Ferredoxin I

  3. NM_001342221.1 → NP_001328732.1  metallo-beta-lactamase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V1X6, A0A1P8B5I6, A0A384KYF4
    Conserved Domains (2) summary
    cd07727
    Location:56 → 233
    YmaE-like_MBL-fold; uncharacterized subgroup which includes Bacillus subtilis YmaE and related proteins; MBL-fold metallo hydrolase domain
    pfam13370
    Location:1 → 31
    Fer4_13; 4Fe-4S single cluster domain of Ferredoxin I
Nucleotide Protein
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