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Glycosyl hydrolase family 10 protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829528, updated on 18-Sep-2024

Summary

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Official Full Name
Glycosyl hydrolase family 10 protein
Primary source
TAIR:AT4G33860
Locus tag
AT4G33860
See related
Araport:AT4G33860
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17I5.50; F17I5_50
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Genomic context

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Location:
chromosome: 4
Exon count:
6
Sequence:
Chromosome: 4; NC_003075.7 (16229908..16232365, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Glycosyl hydrolase family 10 protein Neighboring gene miscRNA Neighboring gene Ribosomal protein S14p/S29e family protein Neighboring gene Peroxidase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_119543.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Glycosyl hydrolase family 10 protein
NP_195112.2
  • Glycosyl hydrolase family 10 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Carbohydrate-binding, CenC-like (InterPro:IPR003305), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Galactose-binding domain-like (InterPro:IPR008979), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 10 protein (TAIR:AT4G33840.1); Has 2031 Blast hits to 2022 proteins in 431 species: Archae - 10; Bacteria - 1156; Metazoa - 20; Fungi - 351; Plants - 271; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    16229908..16232365 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119543.3 → NP_195112.2  Glycosyl hydrolase family 10 protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195112.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XYE0, F4JJU9
    Conserved Domains (2) summary
    smart00633
    Location:258 → 506
    Glyco_10; Glycosyl hydrolase family 10
    cl19911
    Location:44 → 164
    CBM_4_9; Carbohydrate binding domain
Nucleotide Protein
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