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SK11 SKP1-like 11 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829569, updated on 18-Sep-2024

Summary

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Official Symbol
SK11
Official Full Name
SKP1-like 11
Primary source
TAIR:AT4G34210
Locus tag
AT4G34210
See related
Araport:AT4G34210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ASK11; F10M10.2; SKP1-like 11
Summary
one of 20 SKP1 homologs in Arabidopsis. Protein is most similar to ASK12 and RNAi lines show defects in stamen development.
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Genomic context

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See SK11 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (16379003..16379528)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Cyclase family protein Neighboring gene stress enhanced protein 1 Neighboring gene D-3-phosphoglycerate dehydrogenase Neighboring gene carbohydrate esterase, putative (DUF303) Neighboring gene Leucine-rich repeat protein kinase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The GSK3/Shaggy-Like Kinase ASKα Contributes to Pattern-Triggered Immunity. Stampfl H, et al. Plant Physiol, 2016 Jun. PMID 27208232, Free PMC Article
  2. Site-specific phosphorylation of TRANSPARENT TESTA GLABRA1 mediates carbon partitioning in Arabidopsis seeds. Li C, et al. Nat Commun, 2018 Feb 8. PMID 29422671, Free PMC Article
  3. The Arabidopsis thaliana F-box protein FBL17 is essential for progression through the second mitosis during pollen development. Gusti A, et al. PLoS One, 2009. PMID 19277118, Free PMC Article
  4. A high-throughput system for two-hybrid screening based on growth curve analysis in microtiter plates. Diaz-Camino C, et al. Anal Biochem, 2003 May 15. PMID 12711337
  5. E3 SUMO ligase AtSIZ1 positively regulates SLY1-mediated GA signalling and plant development. Kim SI, et al. Biochem J, 2015 Jul 15. PMID 26008766

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Site-specific phosphorylation of TTG1 by SK11/SK12 regulates carbon partitioning between zygotic and maternal sinks in seeds.
    Title: Site-specific phosphorylation of TRANSPARENT TESTA GLABRA1 mediates carbon partitioning in Arabidopsis seeds.
  2. ASKalpha and Glucose-6-phosphate dehydrogenase constitute an immune signaling module downstream of pattern recognition receptors, linking protein phosphorylation cascades to metabolic regulation.
    Title: The GSK3/Shaggy-Like Kinase ASKα Contributes to Pattern-Triggered Immunity.
  3. ASK11 is an SKP1-like partner protein of FBL17.
    Title: The Arabidopsis thaliana F-box protein FBL17 is essential for progression through the second mitosis during pollen development.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_119584.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SKP1-like 11
NP_567959.1
  • SKP1-like 11 (SK11); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 12 (TAIR:AT4G34470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    16379003..16379528
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119584.2 → NP_567959.1  SKP1-like 11 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567959.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0MFB7, O49484
    UniProtKB/TrEMBL
    A0A178V344, A0A5S9XZD0
    Conserved Domains (3) summary
    smart00512
    Location:3 → 102
    Skp1; Found in Skp1 protein family
    COG5201
    Location:5 → 150
    SKP1; SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
    pfam01466
    Location:78 → 150
    Skp1; Skp1 family, dimerization domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O49484.1

Gene LinkOut

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