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carbohydrate esterase, putative (DUF303) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829570, updated on 18-Sep-2024

Summary

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Official Full Name
carbohydrate esterase, putative (DUF303)
Primary source
TAIR:AT4G34215
Locus tag
AT4G34215
See related
Araport:AT4G34215
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Summary
Encodes a member of the SGNH-hydrolase superfamily of enzymes. The enzymes of the SGNH-hydrolase superfamily facilitate the hydrolysis of ester, thioester and amide bonds in a range of substrates including complex polysaccharides, lysophospholipids, acyl-CoA esters and other compounds.
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (16379603..16381449, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene stress enhanced protein 1 Neighboring gene D-3-phosphoglycerate dehydrogenase Neighboring gene SKP1-like 11 Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The structure at 1.6 Angstroms resolution of the protein product of the At4g34215 gene from Arabidopsis thaliana. Bitto E, et al. Acta Crystallogr D Biol Crystallogr, 2005 Dec. PMID 16301800
  2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_119585.2
NM_179162.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables hydrolase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
carbohydrate esterase, putative (DUF303)
NP_567960.1
  • Domain of unknown function (DUF303); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF303, acetylesterase putative (InterPro:IPR005181); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF303) (TAIR:AT3G53010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_849493.1
  • Domain of unknown function (DUF303); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF303, acetylesterase putative (InterPro:IPR005181); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF303) (TAIR:AT3G53010.1); Has 345 Blast hits to 345 proteins in 104 species: Archae - 2; Bacteria - 231; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    16379603..16381449 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179162.4 → NP_849493.1  carbohydrate esterase, putative (DUF303) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849493.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49483, Q8L9J9
    UniProtKB/TrEMBL
    A0A178UUK7, A0A5S9XYH9, A0A654FVC6
    Conserved Domains (1) summary
    pfam03629
    Location:21 → 257
    SASA; Carbohydrate esterase, sialic acid-specific acetylesterase

  2. NM_119585.2 → NP_567960.1  carbohydrate esterase, putative (DUF303) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567960.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49483, Q8L9J9
    UniProtKB/TrEMBL
    A0A178UUK7, A0A5S9XYH9, A0A654FVC6
    Conserved Domains (1) summary
    pfam03629
    Location:21 → 257
    SASA; Carbohydrate esterase, sialic acid-specific acetylesterase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8L9J9.2

Gene LinkOut

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