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SSR16 small subunit ribosomal protein 16 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829614, updated on 18-Sep-2024

Summary

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Official Symbol
SSR16
Official Full Name
small subunit ribosomal protein 16
Primary source
TAIR:AT4G34620
Locus tag
AT4G34620
See related
Araport:AT4G34620
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
RIBOSOMAL PROTEIN S16; small subunit ribosomal protein 16; T4L20.200; T4L20_200
Summary
Encodes ribosomal protein S16, has embryo-defective lethal mutant phenotype
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Genomic context

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See SSR16 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (16534855..16536224, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene BEL1-like homeodomain 6 Neighboring gene prostatic spermine-binding-like protein Neighboring gene squalene synthase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A transposon insertion in the Arabidopsis SSR16 gene causes an embryo-defective lethal mutation. Tsugeki R, et al. Plant J, 1996 Sep. PMID 8811862
  2. Substitution of the gene for chloroplast RPS16 was assisted by generation of a dual targeting signal. Ueda M, et al. Mol Biol Evol, 2008 Aug. PMID 18453549
  3. Arabidopsis scaffold protein RACK1A interacts with diverse environmental stress and photosynthesis related proteins. Kundu N, et al. Plant Signal Behav, 2013 May. PMID 23435172, Free PMC Article
  4. A split-ubiquitin yeast two-hybrid screen to examine the substrate specificity of atToc159 and atToc132, two Arabidopsis chloroplast preprotein import receptors. Dutta S, et al. PLoS One, 2014. PMID 24736607, Free PMC Article
  5. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_119628.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables structural constituent of ribosome ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within embryo development ending in seed dormancy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast envelope HDA PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 
located_in plastid IDA
Inferred from Direct Assay
more info
 PubMed 
located_in ribosome TAS
Traceable Author Statement
more info
 PubMed 

General protein information

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Preferred Names
small subunit ribosomal protein 16
NP_195188.1
  • small subunit ribosomal protein 16 (SSR16); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis, embryo development ending in seed dormancy; LOCATED IN: ribosome, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S16 (InterPro:IPR000307); BEST Arabidopsis thaliana protein match is: Ribosomal protein S16 family protein (TAIR:AT5G56940.1); Has 8683 Blast hits to 8683 proteins in 3031 species: Archae - 0; Bacteria - 5404; Metazoa - 128; Fungi - 129; Plants - 717; Viruses - 0; Other Eukaryotes - 2305 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    16534855..16536224 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119628.5 → NP_195188.1  small subunit ribosomal protein 16 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195188.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O65686
    UniProtKB/TrEMBL
    A0A178UZA3, A0A5S9XZC0
    Conserved Domains (1) summary
    TIGR00002
    Location:3 → 83
    S16; ribosomal protein S16
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O65686.1

Gene LinkOut

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