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Transducin/WD40 repeat-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829690, updated on 18-Sep-2024

Summary

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Official Full Name
Transducin/WD40 repeat-like superfamily protein
Primary source
TAIR:AT4G35370
Locus tag
AT4G35370
See related
Araport:AT4G35370
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F23E12.70; F23E12_70
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Genomic context

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Location:
chromosome: 4
Exon count:
13
Sequence:
Chromosome: 4; NC_003075.7 (16815138..16817544)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Nucleotide-sugar transporter family protein Neighboring gene xylem cysteine peptidase 1 Neighboring gene pantothenate kinase Neighboring gene exodeoxyribonuclease VII, small subunit Neighboring gene SEC7-like guanine nucleotide exchange family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Transducin/WD40 repeat-like superfamily protein
NP_195263.4
  • Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G18905.1); Has 35855 Blast hits to 22159 proteins in 637 species: Archae - 32; Bacteria - 3793; Metazoa - 14224; Fungi - 8619; Plants - 4898; Viruses - 0; Other Eukaryotes - 4289 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    16815138..16817544
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119703.4 → NP_195263.4  Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195263.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FVP9, F4JN04
    Conserved Domains (3) summary
    COG2319
    Location:178 → 416
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:219 → 256
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:180 → 407
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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