Senescence/dehydration-associated protein-like protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Senescence/dehydration-associated protein-like protein
Primary source: TAIR:AT4G35985
Locus tag: AT4G35985
See related: Araport:AT4G35985
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 4

Sequence:: Chromosome: 4; NC_003075.7 (17031945..17034244, complement)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

Orthologs from OrthoDB

NM_001342392.1

Supported by ESTs:

NM_001342393.1

Supported by ESTs:

NM_119765.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in response to cold	IEP Inferred from Expression Pattern more info	PubMed
involved_in response to oomycetes	IEP Inferred from Expression Pattern more info	PubMed
involved_in response to salt stress	IEP Inferred from Expression Pattern more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Senescence/dehydration-associated protein-like protein

NP_567995.1

Senescence/dehydration-associated protein-related; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Senescence/spartin-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: Senescence/dehydration-associated protein-related (TAIR:AT2G17840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

17031945..17034244 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_119765.2 → NP_567995.1 Senescence/dehydration-associated protein-like protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_567995.1

Status: REVIEWED

UniProtKB/Swiss-Prot

F4JNX2, O65635

UniProtKB/TrEMBL

A0A178V1R9, A0A5S9XZ10, A0A7G2F691

Conserved Domains (1) summary

pfam06911
Location:248 → 413

Senescence; Senescence-associated protein
NM_001342392.1 → NP_001328054.1 Senescence/dehydration-associated protein-like protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8B3F8
NM_001342393.1 → NP_001328053.1 Senescence/dehydration-associated protein-like protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8B3G4