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PLC1 phospholipase C1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830010, updated on 18-Sep-2024

Summary

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Official Symbol
PLC1
Official Full Name
phospholipase C1
Primary source
TAIR:AT4G38530
Locus tag
AT4G38530
See related
Araport:AT4G38530
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATPLC1; ATPLC3; Phosphoinositide-Specific Phospholipase C Isoform 3; phospholipase C1; PLC3
Summary
Encodes a putative phosphoinositide-specific phospholipase C. There are two genes called ATPLC1, one corresponding to AT4g38530 (this one) and one corresponding to AT5g58670.
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Genomic context

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See PLC1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Sequence:
Chromosome: 4; NC_003075.7 (18020567..18022985)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Sept9 (DUF616) Neighboring gene ATPase, V1 complex, subunit B protein Neighboring gene Protein phosphatase 2C family protein Neighboring gene ncRNA Neighboring gene FAD/NAD(P)-binding oxidoreductase family protein Neighboring gene ncRNA Neighboring gene phospholipase-like protein (PEARLI 4) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis Phospholipase C3 is Involved in Lateral Root Initiation and ABA Responses in Seed Germination and Stomatal Closure. Zhang Q, et al. Plant Cell Physiol, 2018 Mar 1. PMID 29309666
  2. The role of AtPLC3 and AtPLC9 in thermotolerance in Arabidopsis. Ren H, et al. Plant Signal Behav, 2017 Oct 3. PMID 27070271, Free PMC Article
  3. Arabidopsis thaliana phosphoinositide-specific phospholipase C isoform 3 (AtPLC3) and AtPLC9 have an additive effect on thermotolerance. Gao K, et al. Plant Cell Physiol, 2014 Nov. PMID 25149227
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Overexpression of PLC3 had no effect on root system architecture or seed germination, but increased the plant's tolerance to drought.[PLC3]
    Title: Arabidopsis Phospholipase C3 is Involved in Lateral Root Initiation and ABA Responses in Seed Germination and Stomatal Closure.
  2. Similar expression patterns and phenotypes suggested that AtPLC3 and AtPLC9 may regulate the thermotolerance of Arabidopsis by the same mechanisms.
    Title: The role of AtPLC3 and AtPLC9 in thermotolerance in Arabidopsis.
  3. At4g38530 and Arabidopsis thaliana phosphoinositide-specific phospholipase C isoform 9 have an additive effect on thermotolerance.
    Title: Arabidopsis thaliana phosphoinositide-specific phospholipase C isoform 3 (AtPLC3) and AtPLC9 have an additive effect on thermotolerance.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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NM_120014.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables phosphatidylinositol phospholipase C activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
phospholipase C1
NP_195565.2
  • phospholipase C1 (PLC1); FUNCTIONS IN: phospholipase C activity; INVOLVED IN: signal transduction, intracellular signaling pathway, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), Phospholipase C, phosphatidylinositol-specific, X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific (InterPro:IPR001192), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711); BEST Arabidopsis thaliana protein match is: phospholipase C1 (TAIR:AT5G58670.1); Has 2562 Blast hits to 1935 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 1702; Fungi - 403; Plants - 251; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    18020567..18022985
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120014.5 → NP_195565.2  phospholipase C1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195565.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q38811, Q56W08, Q9SZN3
    UniProtKB/TrEMBL
    A0A178UYI1, A0A5S9Y036
    Conserved Domains (1) summary
    PLN02228
    Location:1 → 564
    PLN02228; Phosphoinositide phospholipase C
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q56W08.1

Gene LinkOut

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