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histidine-tRNA ligase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830288, updated on 18-Sep-2024

Summary

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Official Full Name
histidine-tRNA ligase
Primary source
TAIR:AT5G04090
Locus tag
AT5G04090
See related
Araport:AT5G04090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F21E1.10
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (1105352..1108282, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RNA-directed DNA polymerase (reverse transcriptase) Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene cysteine-rich TM module stress tolerance protein Neighboring gene DNA GYRASE B3 Neighboring gene Phosphoglycerate mutase family protein Neighboring gene DNA GYRASE B2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001342745.1
NM_001342746.1
NM_001342747.1
NM_001342748.1
NM_001342749.1
NM_120491.4
NM_202999.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
histidine-tRNA ligase
NP_196029.3
  • Plant protein 1589 of unknown function; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT3G10250.2); Has 129 Blast hits to 129 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 116; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
NP_974728.2
  • Plant protein 1589 of unknown function; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT3G10250.2); Has 236 Blast hits to 234 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    1105352..1108282 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_202999.3 → NP_974728.2  histidine-tRNA ligase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974728.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UGW3, Q3E6T6, Q66GM7, Q9LZA1
    Conserved Domains (1) summary
    pfam09713
    Location:19 → 69
    A_thal_3526; Plant protein 1589 of unknown function (A_thal_3526)

  2. NM_120491.4 → NP_196029.3  histidine-tRNA ligase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196029.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4KI54, Q9LZA1
    Conserved Domains (1) summary
    cl09915
    Location:9 → 28
    A_thal_3526; Plant protein 1589 of unknown function (A_thal_3526)

  3. NM_001342747.1 → NP_001331480.1  histidine-tRNA ligase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4KI54, Q9LZA1

  4. NM_001342745.1 → NP_001331482.1  histidine-tRNA ligase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4KI54, Q9LZA1

  5. NM_001342746.1 → NP_001331481.1  histidine-tRNA ligase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BDZ4, Q9LZA1

  6. NM_001342749.1 → NP_001331478.1  histidine-tRNA ligase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BDZ4, Q9LZA1

  7. NM_001342748.1 → NP_001331479.1  histidine-tRNA ligase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UIE7, A0A1P8BE07, A0A384LCX7, Q9FYF1
    Conserved Domains (1) summary
    pfam09713
    Location:36 → 86
    A_thal_3526; Plant protein 1589 of unknown function (A_thal_3526)
Nucleotide Protein
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