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GYRB3 DNA GYRASE B3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830289, updated on 18-Sep-2024

Summary

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Official Symbol
GYRB3
Official Full Name
DNA GYRASE B3
Primary source
TAIR:AT5G04110
Locus tag
AT5G04110
See related
Araport:AT5G04110
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AT5G04100; DNA GYRASE B3; F21E1.30; F21E1_30
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Genomic context

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See GYRB3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Sequence:
Chromosome: 5; NC_003076.8 (1110342..1115007, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene cysteine-rich TM module stress tolerance protein Neighboring gene histidine-tRNA ligase Neighboring gene Phosphoglycerate mutase family protein Neighboring gene DNA GYRASE B2 Neighboring gene glutamate synthase 1 Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis thaliana DNA gyrase is targeted to chloroplasts and mitochondria. Wall MK, et al. Proc Natl Acad Sci U S A, 2004 May 18. PMID 15136745, Free PMC Article
  2. Arabidopsis thaliana GYRB3 does not encode a DNA gyrase subunit. Evans-Roberts KM, et al. PLoS One, 2010 Mar 26. PMID 20360860, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001342751.1
NM_001342752.1
NM_120493.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
NOT enables DNA topoisomerase activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables DNA topoisomerase activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DNA GYRASE B3
NP_196031.2
  • DNA GYRASE B3 (GYRB3); FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding; INVOLVED IN: DNA topological change, DNA metabolic process; LOCATED IN: chromosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), DNA topoisomerase, type IIA, subunit B, domain 2 (InterPro:IPR013506), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), DNA topoisomerase, type IIA, subunit B (InterPro:IPR000565), DNA topoisomerase, type IIA, subunit B/N-terminal (InterPro:IPR001241); BEST Arabidopsis thaliana protein match is: DNA GYRASE B2 (TAIR:AT5G04130.1); Has 21414 Blast hits to 21375 proteins in 6002 species: Archae - 105; Bacteria - 17678; Metazoa - 58; Fungi - 26; Plants - 200; Viruses - 8; Other Eukaryotes - 3339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    1110342..1115007 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342750.1 → NP_001330565.1  DNA GYRASE B3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U9Q5, A0A1P8BB88

  2. NM_120493.3 → NP_196031.2  DNA GYRASE B3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196031.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UBL5, Q8VY11
    Conserved Domains (2) summary
    cd00167
    Location:469 → 517
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00204
    Location:41 → 210
    DNA_gyraseB; DNA gyrase B

  3. NM_001342752.1 → NP_001330564.1  DNA GYRASE B3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UBL5, A0A1P8BB70

  4. NM_001342751.1 → NP_001330566.1  DNA GYRASE B3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UBL5, Q8VY11
    Conserved Domains (2) summary
    cd00167
    Location:469 → 517
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00204
    Location:41 → 210
    DNA_gyraseB; DNA gyrase B
Nucleotide Protein
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