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Plant self-incompatibility protein S1 family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830314, updated on 18-Sep-2024

Summary

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Official Full Name
Plant self-incompatibility protein S1 family
Primary source
TAIR:AT5G04350
Locus tag
AT5G04350
See related
Araport:AT5G04350
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T19N18.80; T19N18_80
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Genomic context

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Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (1220829..1221269)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene 6 Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene limit dextrinase Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Plant self-incompatibility protein S1 family
NP_196055.1
  • Plant self-incompatibility protein S1 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT5G04347.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    1220829..1221269
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120517.1 → NP_196055.1  Plant self-incompatibility protein S1 family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196055.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UND1, A0A5S9Y1B7, F4JW86
    Conserved Domains (1) summary
    pfam05938
    Location:28 → 119
    Self-incomp_S1; Plant self-incompatibility protein S1
Nucleotide Protein
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