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RAP release 2, galactose-binding-like domain protein, putative (DUF1997) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830323, updated on 18-Sep-2024

Summary

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Official Full Name
RAP release 2, galactose-binding-like domain protein, putative (DUF1997)
Primary source
TAIR:AT5G04440
Locus tag
AT5G04440
See related
Araport:AT5G04440
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T19N18.1
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (1254757..1257040)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene NAC domain containing protein 2 Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene binding to TOMV RNA 1L (long form) Neighboring gene RING/U-box superfamily protein Neighboring gene uncharacterized protein Neighboring gene cyclin-dependent protein kinase inhibitor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_120526.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RAP release 2, galactose-binding-like domain protein, putative (DUF1997)
NP_196064.2
  • Protein of unknown function (DUF1997); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1997 (InterPro:IPR018971); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1997) (TAIR:AT4G31115.1); Has 266 Blast hits to 266 proteins in 73 species: Archae - 0; Bacteria - 111; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    1254757..1257040
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342773.1 → NP_001332161.1  RAP release 2, galactose-binding-like domain protein, putative (DUF1997) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BG49, Q9LZ81

  2. NM_120526.5 → NP_196064.2  RAP release 2, galactose-binding-like domain protein, putative (DUF1997) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196064.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178ULP9, Q500X2, Q9LZ81
    Conserved Domains (1) summary
    pfam09366
    Location:85 → 241
    DUF1997; Protein of unknown function (DUF1997)
Nucleotide Protein
Heading Accession and Version

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