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VTE5 phytol kinase 1 VTE5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830328, updated on 18-Sep-2024

Summary

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Official Symbol
VTE5
Official Full Name
phytol kinase 1 VTE5
Primary source
TAIR:AT5G04490
Locus tag
AT5G04490
See related
Araport:AT5G04490
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T32M21.90; T32M21_90; vitamin E pathway gene 5
Summary
Encodes a protein with phytol kinase activity involved in tocopherol biosynthesis.
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Genomic context

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See VTE5 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (1279577..1281746)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene glycosyltransferase family protein 47 Neighboring gene 3'-phosphoinositide-dependent protein kinase 1 Neighboring gene 3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tocopherol and phylloquinone biosynthesis in chloroplasts requires the phytol kinase VITAMIN E PATHWAY GENE5 (VTE5) and the farnesol kinase (FOLK). Romer J, et al. Plant Cell, 2024 Mar 29. PMID 38124486, Free PMC Article
  2. The Arabidopsis vitamin E pathway gene5-1 mutant reveals a critical role for phytol kinase in seed tocopherol biosynthesis. Valentin HE, et al. Plant Cell, 2006 Jan. PMID 16361393, Free PMC Article
  3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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NM_001342778.1
NM_120531.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables phytol kinase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in vitamin E biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in vitamin E biosynthetic process IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within vitamin E biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
is_active_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
phytol kinase 1 VTE5
NP_196069.1
  • vitamin E pathway gene 5 (VTE5); FUNCTIONS IN: phytol kinase activity, phosphatidate cytidylyltransferase activity; INVOLVED IN: vitamin E biosynthetic process, phospholipid biosynthetic process; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374); BEST Arabidopsis thaliana protein match is: Phosphatidate cytidylyltransferase family protein (TAIR:AT5G58560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    1279577..1281746
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120531.3 → NP_196069.1  phytol kinase 1 VTE5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196069.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q84WC0, Q8LF61, Q9LZ76
    UniProtKB/TrEMBL
    A0A5S9Y1C3, A0A7G2FCC4
    Conserved Domains (1) summary
    COG0170
    Location:103 → 300
    SEC59; Dolichol kinase [Posttranslational modification, protein turnover, chaperones]

  2. NM_001342778.1 → NP_001330248.1  phytol kinase 1 VTE5 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BA70
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LZ76.1

Gene LinkOut

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