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type-1 restriction enzyme mjaxp r protein (DUF668) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830334, updated on 18-Sep-2024

Summary

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Official Full Name
type-1 restriction enzyme mjaxp r protein (DUF668)
Primary source
TAIR:AT5G04550
Locus tag
AT5G04550
See related
Araport:AT5G04550
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T32M21.140; T32M21_140
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (1303167..1306145, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Myotubularin-like phosphatases II superfamily Neighboring gene HhH-GPD base excision DNA repair family protein Neighboring gene sulfite reductase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A user-friendly platform for yeast two-hybrid library screening using next generation sequencing. Erffelinck ML, et al. PLoS One, 2018. PMID 30576311, Free PMC Article
  2. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001342780.1
NM_120537.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in positive regulation of growth IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
type-1 restriction enzyme mjaxp r protein (DUF668)
NP_196075.1
  • Protein of unknown function (DUF668); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700), Protein of unknown function DUF3475 (InterPro:IPR021864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF668) (TAIR:AT3G23160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    1303167..1306145 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120537.3 → NP_196075.1  type-1 restriction enzyme mjaxp r protein (DUF668) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196075.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U9K0, A0A654FYD2, Q9LZ71
    Conserved Domains (2) summary
    pfam05003
    Location:432 → 523
    DUF668; Protein of unknown function (DUF668)
    pfam11961
    Location:28 → 84
    DUF3475; Domain of unknown function (DUF3475)

  2. NM_001342780.1 → NP_001330121.1  type-1 restriction enzyme mjaxp r protein (DUF668) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U9K0, A0A654FYD2, Q9LZ71
    Conserved Domains (2) summary
    pfam05003
    Location:432 → 523
    DUF668; Protein of unknown function (DUF668)
    pfam11961
    Location:28 → 84
    DUF3475; Domain of unknown function (DUF3475)
Nucleotide Protein
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