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NF-YA10 nuclear factor Y, subunit A10 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830539, updated on 18-Sep-2024

Summary

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Official Symbol
NF-YA10
Official Full Name
nuclear factor Y, subunit A10
Primary source
TAIR:AT5G06510
Locus tag
AT5G06510
See related
Araport:AT5G06510
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
''nuclear factor Y; F15M7.4; F15M7_4; nuclear factor Y; subunit A10; subunit A10''
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Genomic context

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See NF-YA10 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (1984823..1987064)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene AGAMOUS-like 96 Neighboring gene SWAP (Suppressor-of-White-APricot)/surp domain-containing protein Neighboring gene ABC-2 type transporter family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Zhang M, et al. Sci Rep, 2017 May 3. PMID 28469131, Free PMC Article
  2. Studies on differential nuclear translocation mechanism and assembly of the three subunits of the Arabidopsis thaliana transcription factor NF-Y. Hackenberg D, et al. Mol Plant, 2012 Jul. PMID 22199235
  3. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
  4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001342883.1
NM_120734.4
NM_203012.1
NM_203013.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
part_of CCAAT-binding factor complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
nuclear factor Y, subunit A10
NP_196269.1
  • ''nuclear factor Y, subunit A10'' (NF-YA10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: stem, vascular tissue, embryo, leaf whorl, seed; EXPRESSED DURING: F mature embryo stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A2 (TAIR:AT3G05690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
NP_974741.1
  • ''nuclear factor Y, subunit A10'' (NF-YA10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: stem, vascular tissue, embryo, leaf whorl, seed; EXPRESSED DURING: F mature embryo stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A2 (TAIR:AT3G05690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_974742.1
  • ''nuclear factor Y, subunit A10'' (NF-YA10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: stem, vascular tissue, embryo, leaf whorl, seed; EXPRESSED DURING: F mature embryo stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A2 (TAIR:AT3G05690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    1984823..1987064
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342881.1 → NP_001330575.1  nuclear factor Y, subunit A10 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LFU0, Q9FG19
    UniProtKB/TrEMBL
    A0A178URE3, A0A5S9Y2S4, A0A7G2F8T7
    Conserved Domains (1) summary
    smart00521
    Location:132 → 189
    CBF; CCAAT-Binding transcription Factor

  2. NM_001342882.1 → NP_001330576.1  nuclear factor Y, subunit A10 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LFU0, Q9FG19
    UniProtKB/TrEMBL
    A0A178URE3, A0A5S9Y2S4, A0A7G2F8T7
    Conserved Domains (1) summary
    smart00521
    Location:132 → 189
    CBF; CCAAT-Binding transcription Factor

  3. NM_001342880.1 → NP_001330574.1  nuclear factor Y, subunit A10 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UQ75, A0A1P8BB86, A0A384L198

  4. NM_120734.4 → NP_196269.1  nuclear factor Y, subunit A10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196269.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LFU0, Q9FG19
    UniProtKB/TrEMBL
    A0A178URE3, A0A5S9Y2S4, A0A7G2F8T7
    Conserved Domains (1) summary
    smart00521
    Location:132 → 189
    CBF; CCAAT-Binding transcription Factor

  5. NM_203013.3 → NP_974742.1  nuclear factor Y, subunit A10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974742.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4K3V7
    Conserved Domains (1) summary
    smart00521
    Location:83 → 140
    CBF; CCAAT-Binding transcription Factor

  6. NM_203012.1 → NP_974741.1  nuclear factor Y, subunit A10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974741.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LFU0, Q9FG19
    UniProtKB/TrEMBL
    A0A178URE3, A0A5S9Y2S4, A0A7G2F8T7
    Conserved Domains (1) summary
    smart00521
    Location:132 → 189
    CBF; CCAAT-Binding transcription Factor

  7. NM_001342883.1 → NP_001330577.1  nuclear factor Y, subunit A10 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UQ75, A0A1P8BB86, A0A384L198
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8LFU0.2

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