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SDG38 SET domain protein 38 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830550, updated on 18-Sep-2024

Summary

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Official Symbol
SDG38
Official Full Name
SET domain protein 38
Primary source
TAIR:AT5G06620
Locus tag
AT5G06620
See related
Araport:AT5G06620
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATXR4; F15M7.15; F15M7_15; SET domain protein 38
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Genomic context

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See SDG38 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (2033760..2036266)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ubiquitin-specific protease 12 Neighboring gene lipase (DUF620) Neighboring gene proline-rich extensin-like family protein Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_120745.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  

General protein information

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Preferred Names
SET domain protein 38
NP_196280.2
  • SET domain protein 38 (SDG38); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: ASH1-related protein 2 (TAIR:AT2G19640.2); Has 1397 Blast hits to 1391 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 497; Fungi - 314; Plants - 290; Viruses - 3; Other Eukaryotes - 293 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2033760..2036266
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342888.1 → NP_001331184.1  SET domain protein 38 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BD47

  2. NM_120745.3 → NP_196280.2  SET domain protein 38 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196280.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FG08
    UniProtKB/TrEMBL
    A0A178UAW9, A0A5S9Y1Y5
    Conserved Domains (1) summary
    pfam00856
    Location:256 → 294
    SET; SET domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FG08.2

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