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CD2-binding protein-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830798, updated on 18-Sep-2024

Summary

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Official Full Name
CD2-binding protein-like protein
Primary source
TAIR:AT5G09390
Locus tag
AT5G09390
See related
Araport:AT5G09390
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T5E8.190; T5E8_190
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Genomic context

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Location:
chromosome: 5
Exon count:
9
Sequence:
Chromosome: 5; NC_003076.8 (2913482..2915979)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene RNA polymerase III RPC4 Neighboring gene K+ uptake permease 7 Neighboring gene ethylene induced calmodulin binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001036782.1
NM_120975.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
CD2-binding protein-like protein
NP_001031859.1
  • CD2-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: suppressor of abi3-5 (TAIR:AT3G54230.2); Has 985 Blast hits to 963 proteins in 202 species: Archae - 8; Bacteria - 24; Metazoa - 477; Fungi - 147; Plants - 129; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).
NP_568211.1
  • CD2-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: suppressor of abi3-5 (TAIR:AT3G54230.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2913482..2915979
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120975.3 → NP_568211.1  CD2-binding protein-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568211.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UEI7, Q8L4S3, Q9FY76
    Conserved Domains (2) summary
    cd16074
    Location:294 → 301
    OCRE; OCRE repeat 1 [structural motif]
    cl23757
    Location:294 → 342
    OCRE; OCRE domain

  2. NM_001036782.1 → NP_001031859.1  CD2-binding protein-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031859.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4KCL2, Q9FY76
    Conserved Domains (2) summary
    cd16074
    Location:294 → 301
    OCRE; OCRE repeat 1 [structural motif]
    cl23757
    Location:294 → 340
    OCRE; OCRE domain
Nucleotide Protein
Heading Accession and Version

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