U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830901, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein
Primary source
TAIR:AT5G10370
Locus tag
AT5G10370
See related
Araport:AT5G10370
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12B17.280; F12B17_280
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (3261149..3267399)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene Ribosomal protein S6e Neighboring gene RING/U-box superfamily protein Neighboring gene Histone superfamily protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The plant-unique protein DRIF1 coordinates with sorting nexin 1 to regulate membrane protein homeostasis. Zhu Y, et al. Plant Cell, 2023 Nov 30. PMID 37647529, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_121075.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein targeting IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
is_active_in endosome IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein
NP_196599.2
  • helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, zinc ion binding, ATP-dependent helicase activity, nucleic acid binding, ATP binding; LOCATED IN: intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Domain of unknown function DUF1605 (InterPro:IPR011709), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), Zinc finger, C2H2-type (InterPro:IPR007087), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (TAIR:AT4G01020.1); Has 13101 Blast hits to 12313 proteins in 1655 species: Archae - 17; Bacteria - 3301; Metazoa - 3520; Fungi - 1983; Plants - 1450; Viruses - 719; Other Eukaryotes - 2111 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    3261149..3267399
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121075.3 → NP_196599.2  helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196599.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4KGU4, Q9LX92
    UniProtKB/TrEMBL
    A0A654FZW7
    Conserved Domains (9) summary
    smart00487
    Location:305 → 489
    DEXDc; DEAD-like helicases superfamily
    smart00647
    Location:1628 → 1696
    IBR; In Between Ring fingers
    smart00847
    Location:703 → 792
    HA2; Helicase associated domain (HA2) Add an annotation
    COG0513
    Location:408 → 647
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd00046
    Location:323 → 461
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00162
    Location:1563 → 1591
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam00271
    Location:510 → 634
    Helicase_C; Helicase conserved C-terminal domain
    pfam01485
    Location:1697 → 1751
    IBR; IBR domain, a half RING-finger domain
    pfam07717
    Location:837 → 940
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4KGU4.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools