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VAMP713 vesicle-associated membrane protein 713 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830984, updated on 18-Sep-2024

Summary

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Official Symbol
VAMP713
Official Full Name
vesicle-associated membrane protein 713
Primary source
TAIR:AT5G11150
Locus tag
AT5G11150
See related
Araport:AT5G11150
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATVAMP713; F2I11.40; F2I11_40; vesicle-associated membrane protein 713
Summary
Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.
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Genomic context

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See VAMP713 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (3546200..3548117, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Exostosin family protein Neighboring gene phospholipase-like protein (PEARLI 4) family protein Neighboring gene adenine phosphoribosyltransferase 5 Neighboring gene DEAD/DEAH box RNA helicase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Suppression of Arabidopsis vesicle-SNARE expression inhibited fusion of H2O2-containing vesicles with tonoplast and increased salt tolerance. Leshem Y, et al. Proc Natl Acad Sci U S A, 2006 Nov 21. PMID 17101982, Free PMC Article
  2. The longin domain regulates subcellular targeting of VAMP7 in Arabidopsis thaliana. Uemura T, et al. FEBS Lett, 2005 May 23. PMID 15876431
  3. Distinct sets of tethering complexes, SNARE complexes, and Rab GTPases mediate membrane fusion at the vacuole in Arabidopsis. Takemoto K, et al. Proc Natl Acad Sci U S A, 2018 Mar 6. PMID 29463724, Free PMC Article
  4. Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Szponarski W, et al. Proteomics, 2004 Feb. PMID 14760709
  5. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001343158.1
NM_121153.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within response to salt stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
part_of HOPS complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane HDA PubMed 
located_in vacuolar membrane TAS
Traceable Author Statement
more info
 PubMed 
located_in vacuole HDA PubMed 

General protein information

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Preferred Names
vesicle-associated membrane protein 713
NP_196676.1
  • vesicle-associated membrane protein 713 (VAMP713); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: vacuolar membrane, vacuole, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: vesicle-associated membrane protein 711 (TAIR:AT4G32150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    3546200..3548117 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121153.5 → NP_196676.1  vesicle-associated membrane protein 713 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196676.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LFP1
    UniProtKB/TrEMBL
    A0A178UF45, A0A7G2F9U8
    Conserved Domains (2) summary
    cd14824
    Location:4 → 119
    Longin; longin domain
    pfam00957
    Location:124 → 212
    Synaptobrevin

  2. NM_001343158.1 → NP_001331552.1  vesicle-associated membrane protein 713 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BEB3, A0A5S9Y409, A0A7G2F9U8
    Conserved Domains (2) summary
    cd14824
    Location:4 → 119
    Longin; longin domain
    pfam00957
    Location:124 → 212
    Synaptobrevin
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LFP1.1

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